View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20063_low_10 (Length: 265)

Name: NF20063_low_10
Description: NF20063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20063_low_10
NF20063_low_10
[»] chr6 (13 HSPs)
chr6 (13-261)||(14016829-14017077)
chr6 (13-182)||(13942813-13942982)
chr6 (13-261)||(13471068-13471313)
chr6 (13-258)||(13873359-13873604)
chr6 (16-261)||(14086419-14086664)
chr6 (13-168)||(13861141-13861296)
chr6 (13-265)||(14112225-14112480)
chr6 (13-252)||(13891086-13891320)
chr6 (13-168)||(14048922-14049077)
chr6 (214-265)||(13942996-13943047)
chr6 (122-258)||(14026857-14026993)
chr6 (13-74)||(14026790-14026851)
chr6 (213-265)||(13861014-13861066)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 14016829 - 14017077
Alignment:
Q  13 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 112  Q
    |||||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14016829 atcagaaaggccacaatctcttaaacttagttctctcagttttggtaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 14016928  T
Q  113 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 212  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  14016929 gacatgtgaagatgggttaaagaattaagattagacaaccactgacctccactgggttcgtcgttgtcaactgttagaaatctaaaaacgtatcctcctt 14017028  T
Q  213 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaat 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14017029 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaat 14017077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 13942813 - 13942982
Alignment:
Q  13 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 112  Q
    |||||||||| ||||||  ||||||||||||||||| |  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13942813 atcagaaaggtcacaatatcttaaacttagttctcttagatttggtaacttaccaaccattttcaaccaactattagatttattaagattagatatcgac 13942912  T
Q  113 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  13942913 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccattgtgatcttcgttgtcaa 13942982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 13471313 - 13471068
Alignment:
Q  13 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 112  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||| | |||||||||  ||| ||||||||||||| || ||| |||||| |||||||||    
T  13471313 atcagaaaggccacaatttcttaaacttagttctatcagttttggtagcttaccaactgtttccaaccaactattaaatctataaagatttgatatcgac 13471214  T
Q  113 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 212  Q
     |||||||||||||||||||||| |||| |||||||| ||||||||||| |||||| || |||||||| |  || |||   | |||||  |||||||       
T  13471213 gacatgtgaagatgggttaaagaggtaaaattagacagccactgacctctactgtgatcttcgttgtccatagtcagatcaccaaaatcatatcctc--- 13471117  T
Q  213 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaat 261  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13471116 caagataaagcttttgtaggtttgtaagctttccaagttgagatggaat 13471068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 13873604 - 13873359
Alignment:
Q  13 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 112  Q
    ||||||||| |||||| |   ||||||||||||| ||| |||||| | ||||||||||| |||||||||||||||| || ||| |||||||||||| |||    
T  13873604 atcagaaagaccacaactttctaaacttagttctttcagttttggtagcttaccaaccaattgcaaccaactattaaatctatcaagattagatattgac 13873505  T
Q  113 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 212  Q
     |||| |||||||||||||||||||| |||||  ||||||||| |||||||||||| || |||||||||| | | |||   |||  |   |||||||||     
T  13873504 aacatctgaagatgggttaaagaagttagattcaacaaccacttacctccactgtgatcctcgttgtcaattatcagagtactatcaccatatcctcctc 13873405  T
Q  213 caagataaagctcttgtaggtttgtaagctttccaagttgagatgg 258  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  13873404 caagataaagatcttgtaggtttgtaagctttccaagttgatatgg 13873359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 14086419 - 14086664
Alignment:
Q  16 agaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgaccac 115  Q
    ||||||| ||||||| ||||||||||||||||| | |||||  ||||||||||||||||| |||||||||||| |||||| ||||||||||||  ||  |    
T  14086419 agaaaggtcacaatttcttaaacttagttctcttagttttgttaacttaccaaccatttgaaaccaactattaaatttatcaagattagatattcacatc 14086518  T
Q  116 atgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctccttcaa 215  Q
    | | ||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||| ||| |||   |||   |  ||   || | |||    
T  14086519 aggcgaagatgggttaaagaagttagattagacaaccactgacctccactgtgatccttgttgtcaattgtcagagcactatcttcatactttcttccaa 14086618  T
Q  216 gataaagctcttgtaggtttgtaagctttccaagttgagatggaat 261  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||    
T  14086619 gataaagctcttgtaggttcgtaagctttccaagttgatatggaat 14086664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 13861296 - 13861141
Alignment:
Q  13 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 112  Q
    |||||||||| ||||||| ||||||||||||||||| | |||||| ||||||||||||||||  |||||||||||| |||||| |||||||||||| |||    
T  13861296 atcagaaaggtcacaatttcttaaacttagttctcttagttttggtaacttaccaaccatttttaaccaactattaaatttatcaagattagatattgac 13861197  T
Q  113 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtg 168  Q
      ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13861196 atcagatgaagatgggttaaagaagtaagattagacaaccactgacctccactgtg 13861141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 14112225 - 14112480
Alignment:
Q  13 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 112  Q
    |||||||||| ||||||| ||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||| |||    
T  14112225 atcagaaaggtcacaatttcttaaacttagttctcttagttttggtaacttaccaaccatttgaaaccaactattaaatttatcaagattagatattgac 14112324  T
Q  113 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttc-gt--cgttgtcaactgttagaaatctaaaattgtatcctc 209  Q
      ||  ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||   |||| ||| ||| |||   |||  |   |  | ||    
T  14112325 atcagatgaagatgggttaaagaggttagattagacaaccactgacctccactgtgatctgtactgttgccaattgtcagagcactatcagcatcccttc 14112424  T
Q  210 cttcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgctt 265  Q
     | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  14112425 ttccaagataaagctcttgtagatttgtaagctttccaatttgagatggaatgctt 14112480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 13891320 - 13891086
Alignment:
Q  13 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 112  Q
    |||||||||||||||| |  ||||   ||||||||||| |||| | | ||||||||||||||||||||||||||| ||||||| |||| ||||||| |||    
T  13891320 atcagaaaggccacaacttattaactctagttctctcagttttagtagcttaccaaccatttgcaaccaactattggatttatcaagactagatattgac 13891221  T
Q  113 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctcctt 212  Q
     |||||||||||||||||||||||||||||||||| |||||  |||||||  |||| ||  ||||||||| ||||||| | |||| | | |||||||       
T  13891220 aacatgtgaagatgggttaaagaagtaagattagataacca--gacctccgttgtgatctccgttgtcaattgttagagaactaagactatatcctc--- 13891126  T
Q  213 caagataaagctcttgtaggtttgtaagctttccaagttg 252  Q
    | | || ||||||||||||||| |||||||||||||||||    
T  13891125 cgaaatgaagctcttgtaggttggtaagctttccaagttg 13891086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 14048922 - 14049077
Alignment:
Q  13 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgac 112  Q
    |||||||||| ||||||   ||||| ||||||||| ||||||||| | |||||||||||||| |||| |||||||| || ||| ||||||  |||| |||    
T  14048922 atcagaaaggtcacaatctgttaaatttagttctcccaattttggtagcttaccaaccatttccaacaaactattaaatctatcaagattcaatattgac 14049021  T
Q  113 cacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccactgtg 168  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14049022 gacatgtgaagatgggttaaagaagtaagattagacaaccactgacctccattgtg 14049077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 13942996 - 13943047
Alignment:
Q  214 aagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgctt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13942996 aagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgctt 13943047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 258
Target Start/End: Original strand, 14026857 - 14026993
Alignment:
Q  122 agatgggttaaagaagtaagattagacaaccactgacctccactgtgttcgtcgttgtcaactgttagaaatctaaaattgtatcctccttcaagataaa 221  Q
    |||||||||||||||||||||||||||||||||||||||||  |||| ||   ||||||||  || |||   |||  |   ||| |   | |||||||||    
T  14026857 agatgggttaaagaagtaagattagacaaccactgacctccgttgtgatccctgttgtcaatagtcagaccactatcaccatattcatttccaagataaa 14026956  T
Q  222 gctcttgtaggtttgtaagctttccaagttgagatgg 258  Q
    |||||||||||||||||||||||||||||||||||||    
T  14026957 gctcttgtaggtttgtaagctttccaagttgagatgg 14026993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 14026790 - 14026851
Alignment:
Q  13 atcagaaaggccacaattacttaaacttagttctctcaattttggcaacttaccaaccattt 74  Q
    ||||||||||||||||||   ||||||||||||||||| |||||| ||||||||||||||||    
T  14026790 atcagaaaggccacaattttgtaaacttagttctctcagttttggtaacttaccaaccattt 14026851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 13861066 - 13861014
Alignment:
Q  213 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgctt 265  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  13861066 caagataaagctcttgtaggttcacaagctttccaagttgagatggaatgctt 13861014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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