View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20063_low_2 (Length: 572)
Name: NF20063_low_2
Description: NF20063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20063_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 9 - 556
Target Start/End: Complemental strand, 28936708 - 28936161
Alignment:
| Q |
9 |
agcagagagtcgtggtgaaggataattaatggttcaatgtacttgatgcatgccttctattatagataggatagataggagagacatgagcaaacacaga |
108 |
Q |
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| T |
28936708 |
agcagtgagtcgtggtgaaggataattaatggttcaatgtacttgatgcatgccttctattatagataggatagataggagagacatgagcaaacacaga |
28936609 |
T |
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| Q |
109 |
aaattgacccccaacacataactgaatgaacccaaattacatcaagattaacggaaaacgtgacaaatttgcaaagtcgcatggcatttaaaatattttg |
208 |
Q |
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| T |
28936608 |
aaattgacccccaacacataactgaatggacccaaattacatcaagattaacggaaaacgtgacaaatttgcaaagtcgcatggcatttaaaatattttg |
28936509 |
T |
|
| Q |
209 |
acaatttagaattacaaattctgattttgattatgcgagatcacacacaaaagacgacactttcacactgtaaaattgccaatagtgaaaaacacagcat |
308 |
Q |
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| T |
28936508 |
acaatttagaattacaaattctgattttgattatgcgagatcacacacaaaagacgacactttcacactgtaaaattgccaatagtgaaaaacacagcat |
28936409 |
T |
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| Q |
309 |
ttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgctgtgttttaaactgaaaatttattgaacaaaaccatcacaataa |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28936408 |
ttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgctgtgttttaaactgaaaatttattgaacaaaaccatcacgataa |
28936309 |
T |
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| Q |
409 |
gttttatttctactacataagaataaattttgcaagctagcaatgaacttcagaaagtaataatttataataccgcagcaacaatgacaggagatgattc |
508 |
Q |
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| T |
28936308 |
gttttatttctactacataagaataaattttgcaagctagcaatgaacttcagaaagtaataatttataataccgcagcaacaatgacaggagatgattc |
28936209 |
T |
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| Q |
509 |
caacatcttgggctctcttaattctacatcggacacatgcaggatctg |
556 |
Q |
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| T |
28936208 |
caacatcgtgggctctcttaattctacatcggacacatgcaggatctg |
28936161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 296 - 528
Target Start/End: Complemental strand, 10189742 - 10189509
Alignment:
| Q |
296 |
aaaaacacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgctgtgttttaaactgaaaatttattgaacaaa |
395 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||| |
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| T |
10189742 |
aaaaatacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatggatttgctgtgtttgaaactgaaaattcatttaacaaa |
10189643 |
T |
|
| Q |
396 |
accatcacaataagttttatttctac--tacataagaataaattttgcaagctagcaatgaacttcagaaagtaataatttataataccgcagcaacaat |
493 |
Q |
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||||||| |||||||||||||||| |||| |||||||| | |||||||| |||||||||| | |||||||||||||||||||| | ||| ||| |
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| T |
10189642 |
accatca-ggtaagttttatttctaccgcgcatacgaataaatctcgcaagctaacaatgaacttttggaagtaataatttataataccactacaataat |
10189544 |
T |
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| Q |
494 |
gacaggagatgattccaacatcttgggctctctta |
528 |
Q |
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| T |
10189543 |
gaatggagatgattccaatatcttgacctctctta |
10189509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 10189937 - 10189888
Alignment:
| Q |
126 |
ataactgaatgaacccaaattacatcaagattaacggaaaacgtgacaaa |
175 |
Q |
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||||||||||| |||||||||| ||||||| |||||||||| ||||||| |
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| T |
10189937 |
ataactgaatggacccaaattatatcaagaataacggaaaaaatgacaaa |
10189888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 296 - 556
Target Start/End: Original strand, 35118021 - 35118283
Alignment:
| Q |
296 |
aaaaacacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgctgtgttttaaactgaaaatttattgaacaaa |
395 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||| |
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| T |
35118021 |
aaaaatacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgctgtgtttgaaactgaaaattcattaagcaaa |
35118120 |
T |
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| Q |
396 |
accatcacaataagttttatttctact--acataagaataaattttgcaagctagcaatgaacttcagaaagtaataatttataataccgcagcaacaat |
493 |
Q |
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||||||| |||||||||| |||| || ||||||||||| | |||||||||| ||||||| || | |||||||||||||||||||| | ||| ||| |
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| T |
35118121 |
accatcaggataagttttacttctgctgcgcataagaataagtcttgcaagctaagaatgaacatctggaagtaataatttataataccactacaataat |
35118220 |
T |
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| Q |
494 |
gacaggagatgattccaacatcttgggctctcttaattctacatcggacacatgcaggatctg |
556 |
Q |
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||| |||||||||||||||||||||| ||||||| || | ||||| |||||||||||||| |
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| T |
35118221 |
gaccggagatgattccaacatcttggcttctcttacatccgcgtcggatacatgcaggatctg |
35118283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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