View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_high_14 (Length: 240)
Name: NF20064_high_14
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_high_14 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 25013074 - 25013296
Alignment:
| Q |
18 |
accatcctacaaataaaatagtgattatgtcaaatactatataatatttcatcaagagattgataatgaaaaaatacaaagtaaatatttgatgttttct |
117 |
Q |
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| T |
25013074 |
accatcctacaaataaaatagtgattatatcaaatactatataatatttcattaagagattgataatgaaaaaatacaaagtaaatatttgatgttttct |
25013173 |
T |
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| Q |
118 |
ttaattgaaattaaatgtgtaacatacctgtaaagtgaagcctgtgactataattgccaaagcaagagaacctgtctcaaggaggttgaagttcaagtcc |
217 |
Q |
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| T |
25013174 |
ttaattgaaattaaatgtgtaacatacctgtaaagtgaagcctgtgactataattgccaaagcaagagaacctgtctcaaggaggttgaagttcaagtcc |
25013273 |
T |
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| Q |
218 |
attttcacacccattatccatgc |
240 |
Q |
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| T |
25013274 |
attttcacacccattatccatgc |
25013296 |
T |
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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 5131194 - 5131113
Alignment:
| Q |
141 |
atacctgtaaagtgaagcctgtgactataattgccaaagcaagagaacctgtctcaaggaggttgaagttcaagtccatttt |
222 |
Q |
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| T |
5131194 |
atacctgtaatgtgaagcctgtggttattattgccaaagcaagagaacctgtttctaggaggttgaaattgaggtccatttt |
5131113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 29784013 - 29784110
Alignment:
| Q |
143 |
acctgtaaagtgaagcctgtgactataattgccaaagcaagagaacctgtctcaaggaggttgaagttcaagtccattttcacacccattatccatgc |
240 |
Q |
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| T |
29784013 |
acctgtaaagtgaaggctgtaacaataattgcaaaaccaagacatccagtttcaagaagattgaagtccaaatccattcgtatacccattatccatgc |
29784110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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