View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20064_high_15 (Length: 236)
Name: NF20064_high_15
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40274032 - 40273812
Alignment:
| Q |
1 |
ttctcgcaatccttctctaaacatgatttccatattttcactatctatgcaacattttaaaaaggacaacactttcttgttaggaaaccatttgattcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40274032 |
ttctcgcaatccttctctaaacatgatttccatattttcactttctatgcaacattttaaaaaggacaacactttcttgttaggaaaccatttgattcat |
40273933 |
T |
|
| Q |
101 |
aagaaattgtctgctgannnnnnnngtaacacgtaatgttcttcaatgacttgaggaaaatcttttcaagacatttcatgctgtgaatgtcaagaaaagg |
200 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40273932 |
aagaaattgtctgcagattttttttgtaacacgtaatgttcttcaatgacttgaggaaaatcttttcaagacatttcatgttgtgaatgtcaagaaaagg |
40273833 |
T |
|
| Q |
201 |
ttgagagattacagttgcaac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
40273832 |
ttgagagattacagttgcaac |
40273812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 40274202 - 40274293
Alignment:
| Q |
1 |
ttctcgcaatccttctctaaacatgatttccatattttcactatctatgcaacattttaaaaaggacaacactttcttgttaggaaaccatt |
92 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| ||| || ||||||| |||||||||| |||| ||||||| |||| |||||||| |
|
|
| T |
40274202 |
ttctcgcaatccttctctaaatattatttccatatttttactttccatgcaacgttttaaaaagaacaaaactttctctttagaaaaccatt |
40274293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 45993355 - 45993412
Alignment:
| Q |
6 |
gcaatccttctctaaacatgatttccatattttcactatctatgcaacattttaaaaa |
63 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||| |||| ||||| | ||||||| |
|
|
| T |
45993355 |
gcaatccttctctaaatattatttccgtattttcactttctaagcaacttcttaaaaa |
45993412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University