View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20064_high_16 (Length: 218)
Name: NF20064_high_16
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_high_16 |
 | |
|
| [»] chr4 (9 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 1760148 - 1759950
Alignment:
| Q |
20 |
tcaaaaccaggcatgacaccacaagatccattttcattttcattgtcaccaccaccatcaacaccaggcgnnnnnnnncctcctcctatggttccagaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1760148 |
tcaaaaccaggcatgacaccacaagatccattttcattttcattgtcaccaccaccatcaacaccaggcgttttgtttcctcctcctatggttccagaac |
1760049 |
T |
|
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgc |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1760048 |
ttccacaacaacccccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgc |
1759950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 1759979 - 1759881
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgc |
218 |
Q |
| |
|
||||| || |||||||||||||| ||| |||||| ||||||||| ||||||| | | ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1759979 |
ttccaaaagaaccaccatctttctccatgccaaacccaacaccatataattctcttcctcctccagagattccacaagaaccaccatctttctccatgc |
1759881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 1759910 - 1759812
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgc |
218 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||| |||||||| |||| ||| | | ||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
1759910 |
ttccacaagaaccaccatctttctccatgccaaacccaacacctgatagttctcttcctcctccagagattccacaagaaccaccaactttctccatgc |
1759812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 1759841 - 1759743
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgc |
218 |
Q |
| |
|
|||||||| |||||||| ||||| ||| |||||| ||||||||||||| || | |||||| |||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
1759841 |
ttccacaagaaccaccaactttctccatgccaaacccaacaccagatatttttctttctccaccagagattccacaagaaccaccaactttctacatgc |
1759743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 1759634 - 1759536
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgc |
218 |
Q |
| |
|
|||||||| |||||||| || || ||||||||||||||||||| |||| || | ||||||||| ||||||||| | ||||||||| |||| |||||| |
|
|
| T |
1759634 |
ttccacaagaaccaccaactatcgccacgccaaatccaacacctgatatttttctttctcctcctgagattccacaggaaccaccaattttcgccatgc |
1759536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 1759565 - 1759480
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccacca |
205 |
Q |
| |
|
||||||| |||||||| |||| ||| |||||||||||||||||||| || | ||||||||| ||||||||| ||||||||||| |
|
|
| T |
1759565 |
ttccacaggaaccaccaattttcgccatgccaaatccaacaccagatatttttctttctcctcctgagattccacaagaaccacca |
1759480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 1759679 - 1759618
Alignment:
| Q |
144 |
ccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccacca |
205 |
Q |
| |
|
|||||||||| ||||||||||||| || | |||||| |||||||||||| ||||||||||| |
|
|
| T |
1759679 |
ccacgccaaacccaacaccagatatttttctttctccaccagagattccacaagaaccacca |
1759618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 1759772 - 1759688
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccacc |
204 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||| ||||| ||||||| || | |||||| |||||||||||| |||||||||| |
|
|
| T |
1759772 |
ttccacaagaaccaccaactttctacatgccaaacccaaccccagatatttttctttctccaccagagattccacaagaaccacc |
1759688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 1760172 - 1760137
Alignment:
| Q |
53 |
tcattttcattgtcaccaccaccatcaacaccaggc |
88 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1760172 |
tcattttcattgtcaccaccaccatcaaaaccaggc |
1760137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University