View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_high_6 (Length: 446)
Name: NF20064_high_6
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Original strand, 47717010 - 47717437
Alignment:
| Q |
11 |
tgaatagcaatgactcagcgatttcaatatcatcattatcatcttctatatcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatt |
110 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717010 |
tgaatagcaatgactcagcgatttcaatatcattattatcatcttctatatcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatt |
47717109 |
T |
|
| Q |
111 |
tttaaaatcaaaatacttataacaattggcttccatttttctttgccatctgtttcttttggaattactgcttctaggttttctctatttgaatgcaaaa |
210 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47717110 |
tttaaaatcaaaatacttataactattggcttccatttttctttgccatctgtctcttttggaattactgcttctaggttgtctctatttgaatgcaaaa |
47717209 |
T |
|
| Q |
211 |
ctttgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaaaattatcctgcattcataccacgacttagacagtctaacaaatttagaa |
310 |
Q |
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| T |
47717210 |
ctctgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaaaattatcctgcatccataccacgacttagacagtctaacaaatttagga |
47717309 |
T |
|
| Q |
311 |
aaggtcacataccttcgagatttatctttgccttccttttccttacgcatatgcaaatgaaaattagcagggaagcaacaacaaccacaacagtcggcac |
410 |
Q |
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| T |
47717310 |
aaggtcacataccttcgagatttatctttgccttccttttccttacgcatatgcaaatgaaaattagcagggaagcaacaacaaccacaacagtcggcac |
47717409 |
T |
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| Q |
411 |
aactatggcgatggtagtatgtgatgat |
438 |
Q |
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| T |
47717410 |
aactatggcgatggtagtatgtgatgat |
47717437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 438
Target Start/End: Original strand, 47744803 - 47745227
Alignment:
| Q |
11 |
tgaatagcaatgactcagcgatttcaatatcatcattatcatcttct---atatcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatcta |
107 |
Q |
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|||||||||||||| ||| |||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
47744803 |
tgaatagcaatgacgcagtgatttcaatatcattattttcatcttcttttatatcttcaaacattgtacaaggcatgttaggaaaatatgctaatatcta |
47744902 |
T |
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| Q |
108 |
atttttaaaatcaaaatacttataacaattggcttccatttttctttgccatctgtttcttttggaattactgcttctaggttttctctatttgaatgca |
207 |
Q |
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||||||||||||||| || || || |||||||||||||||||||| ||||| | |||| |||||||||| |||||||||||||| |||||||||| |
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| T |
47744903 |
atttttaaaatcaaaca--ttgtacaaa--ggcttccatttttctttgccttctgtctatttttgaattactgcatctaggttttctctttttgaatgca |
47744998 |
T |
|
| Q |
208 |
aaactttgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaaaattatcctgcattcataccacgacttagacagtctaacaaattta |
307 |
Q |
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| T |
47744999 |
aaactttgttaaccatcacaacttattattatgaagtagattttatgtcgtcaaaattatcctgcattcataccacgacttagacag--taacgaattta |
47745096 |
T |
|
| Q |
308 |
gaaaaggtcacataccttcgagatttatctttgccttccttttccttacgcatatgcaaatgaaaattagcagg---gaagcaacaacaaccacaacagt |
404 |
Q |
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|| || ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||| |||||||| |
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| T |
47745097 |
gacaaagtcacgtaccttggagatttatctttgccttccttttccttaagcatatgcaaatgaaaattagcaggccagcagcagcaacaacaacaacagt |
47745196 |
T |
|
| Q |
405 |
cggcacaactatggcgatggtagtatgtgatgat |
438 |
Q |
| |
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|||||||||| |||||| |||||||||||||| |
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| T |
47745197 |
cggcacaactgtggcga---tagtatgtgatgat |
47745227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 167 - 438
Target Start/End: Original strand, 47759276 - 47759553
Alignment:
| Q |
167 |
ttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaa----- |
261 |
Q |
| |
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|||| |||||||| | ||||| |||| | |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||| |
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| T |
47759276 |
tttttgaattactacatctagttttttt-tatttgaatgcaaaactttgttaaccattacaacttaatattatgaagtagattttaaatcgtcaaaactc |
47759374 |
T |
|
| Q |
262 |
--aattatcctgcattcataccacgacttagacagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttccttttccttacgca |
359 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||| |||||||| || |||||| |||||||||||||||| |||||||||||||||||| ||| |
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| T |
47759375 |
aaaattatcctgagttcataccacgatttagacagtctactgaatttagacaaagtcacacaccttcgagatttatccttgccttccttttccttaagca |
47759474 |
T |
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| Q |
360 |
tatgcaaatgaaaattagcagggaagcaacaacaaccacaacagtcggcacaactatggcgatggtagtatgtgatgat |
438 |
Q |
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| T |
47759475 |
tatgcaaataaaaattagcagggcggcaacaacaacaacaacagtcggcacaactatggcgatggtagtatgtgatgat |
47759553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 47712255 - 47712524
Alignment:
| Q |
11 |
tgaatagcaatgactcagcgatttcaatatcatcattatcat---cttctatatcttcaaacaatgtacaaggcatgttag--------------aaaaa |
93 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
47712255 |
tgaatagaaatgactcagcgatttcaatatcatcattatcattttcttctatttcttcaaacatgatacaaggcatgttagtaaagtaaaaatagaaaaa |
47712354 |
T |
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| Q |
94 |
tatgctaatatctaatttttaaaatcaaaatacttataacaattggcttccatttttctttgccatctgtt-tcttttggaattactgcttctaggtttt |
192 |
Q |
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||||||||||||||||||||||||| |||| |||||| || |||||| ||||||||||||| || | | || | |||| |||||| ||| |||||||||| |
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| T |
47712355 |
tatgctaatatctaatttttaaaataaaaaaacttatgactattggcgtccatttttctttccctttttttctatttttgaattattgcatctaggtttt |
47712454 |
T |
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| Q |
193 |
ctctatttgaatgcaaaactttgttaaccatcacaacttattat--tatgaagtaaattttatgtcgtcaaaa |
263 |
Q |
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| T |
47712455 |
ctctatttgaatgcaaaa---tgttaaccatcacaacttattattatatgaagtagattttatgtcttcaaaa |
47712524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 47712559 - 47712655
Alignment:
| Q |
339 |
tgccttccttttccttacgcatatgcaaatgaaaattagcagggaagcaacaacaaccacaacagtcggcacaactatggcgatggtagtatgtgatgat |
438 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| |||||||||||||||| |||||||||||||||| |
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| T |
47712559 |
tgccttccttttccttaagcatatgcaaatgaaaattagcagggcagcaacaaca---acagcagttggcacaactatggcgacggtagtatgtgatgat |
47712655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 47713896 - 47714004
Alignment:
| Q |
174 |
attactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcaca--acttattattatgaagtaaattttatgtcgtcaaaattat--cc |
269 |
Q |
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|||||||| |||||||||| | |||||||| |||| ||||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||| || |
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| T |
47713896 |
attactgcatctaggttttttatatttgaaagcaacgctttgttaatcatcacacaacttattattatgaag---attttatgtcgtcaaaactatagcc |
47713992 |
T |
|
| Q |
270 |
tgcattcatacc |
281 |
Q |
| |
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|||||||||||| |
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|
| T |
47713993 |
tgcattcatacc |
47714004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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