View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_high_9 (Length: 313)
Name: NF20064_high_9
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_high_9 |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 70 - 313
Target Start/End: Original strand, 44227120 - 44227363
Alignment:
| Q |
70 |
gtacattttctataatagttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagt |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44227120 |
gtacattttctataatagttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagt |
44227219 |
T |
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| Q |
170 |
ttctgcttttcttgaaaagcaagatcaccaacatcaacttcatgagcacctccatgagaagctgtcaacaaaccttttctcaaacgattataagtaggta |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
44227220 |
ttctgcttttcttgaaaagcaagatcaccaacatcaacttcatgagcacctccatgagaagctgtcaacaaaccttttcttagacgattataagtaggta |
44227319 |
T |
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| Q |
270 |
gcttttcaagtgcagcccatttgagagcttcttcatcatcttct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44227320 |
gcttttcaagtgcagcccatttgagagcttcttcatcatcttct |
44227363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 70 - 313
Target Start/End: Original strand, 44214962 - 44215205
Alignment:
| Q |
70 |
gtacattttctataatagttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagt |
169 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44214962 |
gtacattttctataataattacctatcaactctttccttgaccttcaacagaaacccttcattatcctcttcagcaaccctaaccaacctctccaaaagc |
44215061 |
T |
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| Q |
170 |
ttctgcttttcttgaaaagcaagatcaccaacatcaacttcatgagcacctccatgagaagctgtcaacaaaccttttctcaaacgattataagtaggta |
269 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |
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| T |
44215062 |
ttctgcttttctttaaaagcaagatcaccaacatcaacttcatgagcacctccatgagaagctgtcaacaaaccttttcttagacgattgtaagtaggta |
44215161 |
T |
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| Q |
270 |
gcttttcaagtgcagcccatttgagagcttcttcatcatcttct |
313 |
Q |
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| T |
44215162 |
gtttttcaagtgcagcccatttgagagcttcttcatcatcttct |
44215205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 89 - 313
Target Start/End: Original strand, 44238272 - 44238496
Alignment:
| Q |
89 |
tacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaaaag |
188 |
Q |
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|||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
44238272 |
tacctatcaactctctccttaaccttcaacagaaacccttcattatcttcttcagcaaccttaaccaacctctccaaaagtttctgtttatcttgaaaag |
44238371 |
T |
|
| Q |
189 |
caagatcaccaacatcaacttcatgagcacctccatgagaagctgtcaacaaaccttttctcaaacgattataagtaggtagcttttcaagtgcagccca |
288 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||| ||||||||||| |||||||| |||||||| |
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| T |
44238372 |
caagatcaccaacatcaacttcatgagcaccaccatgagaagctgtcaacaacccttttcttagacgattgtaagtaggtagtttttcaagggcagccca |
44238471 |
T |
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| Q |
289 |
tttgagagcttcttcatcatcttct |
313 |
Q |
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||| ||||||||||||||||||||| |
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| T |
44238472 |
tttaagagcttcttcatcatcttct |
44238496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 88 - 309
Target Start/End: Complemental strand, 2882368 - 2882147
Alignment:
| Q |
88 |
ttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaaaa |
187 |
Q |
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||||||||||| ||||||||||| |||||||| |||| ||||||| ||||||||||||| |||| |||||| ||||| |||||||| || |||||||| |
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| T |
2882368 |
ttacctatcaattctttccttgagcttcaacaaaaacttttcatttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttgaaat |
2882269 |
T |
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| Q |
188 |
gcaagatcaccaacatcaacttcatgagcacctccatgagaagctgtcaacaaaccttttctcaaacgattataagtaggtagcttttcaagtgcagccc |
287 |
Q |
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||||||| | |||||| |||| |||| ||||| | || | | |||||| ||||| |||||||| ||||||||||| || |||||||||||||||| |
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| T |
2882268 |
ccaagatctgttatatcaacctcattagcaactccacgcgatgtcgccaacaatcctttcctcaaacggttataagtagggagtttttcaagtgcagccc |
2882169 |
T |
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| Q |
288 |
atttgagagcttcttcatcatc |
309 |
Q |
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|||| ||||||||||||||||| |
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| T |
2882168 |
atttaagagcttcttcatcatc |
2882147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 313
Target Start/End: Complemental strand, 2872077 - 2871850
Alignment:
| Q |
89 |
tacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaaaag |
188 |
Q |
| |
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|||||||||| ||||||||| | |||||||| |||| |||||||||||||||||||| | || | |||||| | |||||||||||| ||||||||| |
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| T |
2872077 |
tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagcagctttgatcaacctattcaaaagtttctgtctttcttgaactc |
2871978 |
T |
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| Q |
189 |
caagatcaccaacatc---aacttcatgagcacctccatgagaagctgtcaacaaaccttttctcaaacgattataagtaggtagcttttcaagtgcagc |
285 |
Q |
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|||| | | | | ||| || |||| ||| ||||||| ||| | |||||| ||||| | |||||||| |||||||| || ||||||| |||||| |
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| T |
2871977 |
caagtttatctatatcaataatctcattggcaactccatgtgaactggccaacaaccctttctttaaacgattgtaagtagggagtttttcaattgcagc |
2871878 |
T |
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| Q |
286 |
ccatttgagagcttcttcatcatcttct |
313 |
Q |
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||||||||| |||||||||||||||||| |
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| T |
2871877 |
ccatttgagggcttcttcatcatcttct |
2871850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 306
Target Start/End: Original strand, 2902705 - 2902926
Alignment:
| Q |
88 |
ttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaaaa |
187 |
Q |
| |
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||||||||||| ||||||||| | |||||||| |||| | ||||| ||||||||||||| || | |||||| ||||| ||||| || |||||||||| |
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| T |
2902705 |
ttacctatcaattctttccttaagcttcaacaaaaacttctcatttccctcttcagcaacattgatcaacctatccaatagtttttgtctttcttgaaat |
2902804 |
T |
|
| Q |
188 |
gcaagatcac---caacatcaacttcatgagcacctccatgagaagctgtcaacaaaccttttctcaaacgattataagtaggtagcttttcaagtgcag |
284 |
Q |
| |
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||||||||| | ||||| |||| ||| ||||| | || | | |||||| ||||| || ||||| |||||||| || || ||||||||||||| |
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| T |
2902805 |
ccaagatcacttaatatatcaatctcatttgcaactccacgcgatgtcgccaacaaccctttccttaaacggttataagtcgggagtttttcaagtgcag |
2902904 |
T |
|
| Q |
285 |
cccatttgagagcttcttcatc |
306 |
Q |
| |
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||||| | |||||||||||||| |
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| T |
2902905 |
cccatctaagagcttcttcatc |
2902926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 39344227 - 39344152
Alignment:
| Q |
238 |
caaaccttttctcaaacgattataagtaggtagcttttcaagtgcagcccatttgagagcttcttcatcatcttct |
313 |
Q |
| |
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||||||||| |||||||| | | ||||||| || || | || |||||||||||| ||||||||||||||||||||| |
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| T |
39344227 |
caaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttct |
39344152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 39358803 - 39358728
Alignment:
| Q |
238 |
caaaccttttctcaaacgattataagtaggtagcttttcaagtgcagcccatttgagagcttcttcatcatcttct |
313 |
Q |
| |
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||||||||| |||||||| | | ||||||| ||||| | || |||||||||||| |||| |||||||||||||||| |
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| T |
39358803 |
caaacctttcctcaaacgttcaaaagtaggaagcttctgaattgcagcccatttaagagattcttcatcatcttct |
39358728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 39552744 - 39552819
Alignment:
| Q |
238 |
caaaccttttctcaaacgattataagtaggtagcttttcaagtgcagcccatttgagagcttcttcatcatcttct |
313 |
Q |
| |
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||||||||| |||||||| | | ||||||| || || | || |||||||||||| ||||||||||||||||||||| |
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| T |
39552744 |
caaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttct |
39552819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 39332957 - 39332885
Alignment:
| Q |
238 |
caaaccttttctcaaacgattataagtaggtagcttttcaagtgcagcccatttgagagcttcttcatcatct |
310 |
Q |
| |
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||||||||| |||||||| | | ||||||| || | | || |||||||||||| |||||||||||||||||| |
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| T |
39332957 |
caaacctttcctcaaacgttcaaaagtaggaaggatctgaattgcagcccatttaagagcttcttcatcatct |
39332885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 39543564 - 39543596
Alignment:
| Q |
281 |
gcagcccatttgagagcttcttcatcatcttct |
313 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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| T |
39543564 |
gcagcccatttaagagcttcttcatcatcttct |
39543596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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