View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_low_13 (Length: 290)
Name: NF20064_low_13
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_low_13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 29332863 - 29333143
Alignment:
| Q |
10 |
catcatcatccaacgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaa |
109 |
Q |
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| T |
29332863 |
catcatcatccaacgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaa |
29332962 |
T |
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| Q |
110 |
cagaaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcccgataa |
209 |
Q |
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| T |
29332963 |
cagaaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcccgataa |
29333062 |
T |
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| Q |
210 |
gtccattccaagatactcccaaacacaagatcaaaattcccttgattcaaccaaaatgctctctcattcgcaacatccacc |
290 |
Q |
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| T |
29333063 |
gtccattccaagatactcccaaacacaagatcaaaattcccttgattcaaccaaaatgctctctcattcgcaacatccacc |
29333143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 203
Target Start/End: Original strand, 29321724 - 29321862
Alignment:
| Q |
65 |
ctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaa |
164 |
Q |
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| T |
29321724 |
ctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctgaagatccttcgacaataacatcaacgaa |
29321823 |
T |
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| Q |
165 |
attgatgcattgtatgccaatcccttcaattccttatcc |
203 |
Q |
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| T |
29321824 |
agtgatgcagtgaatgccaatgctttcaattcctgatcc |
29321862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 29304486 - 29304676
Alignment:
| Q |
13 |
catcatccaacgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaacag |
112 |
Q |
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|||||||||| ||||||| || | |||||| |||| ||||| ||||| |||||||||||| || |||| |||||| ||| |||| |||||| |||| || |
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| T |
29304486 |
catcatccaatttaactaattcccacaaacgattaatcctattcaccagaacctcttcttctccgtgttgatcgatgatattcaataaattccgcaagag |
29304585 |
T |
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| Q |
113 |
aaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcc |
203 |
Q |
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| T |
29304586 |
agaattggatacttcatttttcagaaaatcatttgacaataatatcaatgaaattgatgaatcgtatgccagtgccttcaattcctgatcc |
29304676 |
T |
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