View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_low_17 (Length: 236)
Name: NF20064_low_17
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40274032 - 40273812
Alignment:
| Q |
1 |
ttctcgcaatccttctctaaacatgatttccatattttcactatctatgcaacattttaaaaaggacaacactttcttgttaggaaaccatttgattcat |
100 |
Q |
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| T |
40274032 |
ttctcgcaatccttctctaaacatgatttccatattttcactttctatgcaacattttaaaaaggacaacactttcttgttaggaaaccatttgattcat |
40273933 |
T |
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| Q |
101 |
aagaaattgtctgctgannnnnnnngtaacacgtaatgttcttcaatgacttgaggaaaatcttttcaagacatttcatgctgtgaatgtcaagaaaagg |
200 |
Q |
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| T |
40273932 |
aagaaattgtctgcagattttttttgtaacacgtaatgttcttcaatgacttgaggaaaatcttttcaagacatttcatgttgtgaatgtcaagaaaagg |
40273833 |
T |
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| Q |
201 |
ttgagagattacagttgcaac |
221 |
Q |
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| T |
40273832 |
ttgagagattacagttgcaac |
40273812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 40274202 - 40274293
Alignment:
| Q |
1 |
ttctcgcaatccttctctaaacatgatttccatattttcactatctatgcaacattttaaaaaggacaacactttcttgttaggaaaccatt |
92 |
Q |
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| T |
40274202 |
ttctcgcaatccttctctaaatattatttccatatttttactttccatgcaacgttttaaaaagaacaaaactttctctttagaaaaccatt |
40274293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 45993355 - 45993412
Alignment:
| Q |
6 |
gcaatccttctctaaacatgatttccatattttcactatctatgcaacattttaaaaa |
63 |
Q |
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| T |
45993355 |
gcaatccttctctaaatattatttccgtattttcactttctaagcaacttcttaaaaa |
45993412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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