View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_low_20 (Length: 207)
Name: NF20064_low_20
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39569506 - 39569703
Alignment:
| Q |
1 |
caagcaaatcttttctttcttgcagcccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
39569506 |
caagcaaatcttttctttcttgcagcccaagcttctcaatatcaatctcaacggcttccccttgaagtgaagtgagcaaacctttcctcaaacgcgcaaa |
39569605 |
T |
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| Q |
101 |
agtaggaagattctgaattgcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39569606 |
agtaggaagattctgaattgcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatcactgctcctcc |
39569703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 39344303 - 39344106
Alignment:
| Q |
1 |
caagcaaatcttttctttcttgcagcccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaa |
100 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
39344303 |
caagcaaatcttttcttacttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaa |
39344204 |
T |
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| Q |
101 |
agtaggaagattctgaattgcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc |
198 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||| |
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| T |
39344203 |
agtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctgagcagcatcactgttcctcc |
39344106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39552668 - 39552865
Alignment:
| Q |
1 |
caagcaaatcttttctttcttgcagcccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaa |
100 |
Q |
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|||| ||||||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
39552668 |
caagtaaatcttttctttcttgcaacccaaggttctcaacatcgatctcagtggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaa |
39552767 |
T |
|
| Q |
101 |
agtaggaagattctgaattgcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc |
198 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||| |||||| |
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| T |
39552768 |
agtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttcttggtggaaagaatttgaaaagatctcagcagcatcactgttcctcc |
39552865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 39358879 - 39358682
Alignment:
| Q |
1 |
caagcaaatcttttctttcttgcagcccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaa |
100 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
39358879 |
caagtaaatcttttctttcttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaa |
39358780 |
T |
|
| Q |
101 |
agtaggaagattctgaattgcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc |
198 |
Q |
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||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||| |
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| T |
39358779 |
agtaggaagcttctgaattgcagcccatttaagagattcttcatcatcttcttggtgaaaagaatttgaaaagatctcagcagcatcactgttcctcc |
39358682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39543445 - 39543642
Alignment:
| Q |
1 |
caagcaaatcttttctttcttgcagcccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaa |
100 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| || ||| ||||||||||||||| ||||||||||| |
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| T |
39543445 |
caagtaaatcttttctttcttgcaacccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaa |
39543544 |
T |
|
| Q |
101 |
agtaggaagattctgaattgcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc |
198 |
Q |
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||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||| |||||| |
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| T |
39543545 |
agtaggaagtttctgaatggcagcccatttaagagcttcttcatcatcttcttggcgaaaagaattagaaaaaatctcagcagcatcactgttcctcc |
39543642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 39333031 - 39332836
Alignment:
| Q |
3 |
agcaaatcttttctttcttgcagcccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaaag |
102 |
Q |
| |
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||||||||||| ||||||||| |||||| ||||||||||||||||| | || | | |||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
39333031 |
agcaaatctttcttttcttgcatcccaaggttctcaacatcaatctcgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaag |
39332932 |
T |
|
| Q |
103 |
taggaagattctgaattgcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc |
198 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||| |||||| |
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| T |
39332931 |
taggaaggatctgaattgcagcccatttaagagcttcttcatcatctccttggtggaaagaatttgaaaaaatctcggctgcatcactgttcctcc |
39332836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 39585472 - 39585543
Alignment:
| Q |
77 |
caaacctttcctcaaacgtgcaaaagtaggaagattctgaattgcagcccacttaagagcttcttcatcatc |
148 |
Q |
| |
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||||||| ||||||| ||||||| ||| ||||| |||||||||||||||| || | ||| ||||||||||| |
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| T |
39585472 |
caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatcatc |
39585543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 39579142 - 39579210
Alignment:
| Q |
77 |
caaacctttcctcaaacgtgcaaaagtaggaagattctgaattgcagcccacttaagagcttcttcatc |
145 |
Q |
| |
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||||||| ||||||| ||||||| ||| ||||| |||||||||||||||| || | ||| |||||||| |
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| T |
39579142 |
caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatc |
39579210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 44238464 - 44238497
Alignment:
| Q |
120 |
gcagcccacttaagagcttcttcatcatcttctt |
153 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
44238464 |
gcagcccatttaagagcttcttcatcatcttctt |
44238497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 2882214 - 2882142
Alignment:
| Q |
81 |
cctttcctcaaacgtgcaaaagtaggaagattctgaattgcagcccacttaagagcttcttcatcatcttctt |
153 |
Q |
| |
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|||||||||||||| | ||||||| || || | || ||||||||| |||||||||||||||||||| |||| |
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| T |
2882214 |
cctttcctcaaacggttataagtagggagtttttcaagtgcagcccatttaagagcttcttcatcatcatctt |
2882142 |
T |
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