View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_low_3 (Length: 519)
Name: NF20064_low_3
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 21 - 359
Target Start/End: Complemental strand, 33034406 - 33034068
Alignment:
| Q |
21 |
agaaggtgttagagaatatatttcaattgcttatcaaagtcaatagnnnnnnnttactttacaaaaactgctgattcctgtccaatgtccatttgcctct |
120 |
Q |
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| T |
33034406 |
agaaggtgttagagaatatatttcaattgcttatcaaagtcaatagaaaaaaattactttacaaaaactgctgattcctgtccaatgtccatttgcctct |
33034307 |
T |
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| Q |
121 |
ttttgaacttggagagtatctgatgcaaaatattgcaaagctgcagaaaaaatatcatttcactttgaggttgatcaaacacatggatgacctgcaaaat |
220 |
Q |
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| T |
33034306 |
ttttgaacttggagagtatctgatgcaaaatattgcaaagctgcagaaaaaatatcatttcactttgaggttgatcaaacacatggatgacctgcaaaat |
33034207 |
T |
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| Q |
221 |
cataagtatgaaaataatgcttaaaagcattggaaaatacataactagttgatgatgctcacgaacttttccaaacttatgacattacttaccatgtagt |
320 |
Q |
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| T |
33034206 |
cataagtatgaaaataatgcttaaaagcattggaaaatacataactagttgatgatgctcacgaacttttccaaacttatgacattacttaccatgtagt |
33034107 |
T |
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| Q |
321 |
agtcggggcgaaaattgaaattctcacaatacagataag |
359 |
Q |
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| T |
33034106 |
agtcggggcgaaaattgaaattctcacaatacagataag |
33034068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 393 - 513
Target Start/End: Complemental strand, 33034070 - 33033950
Alignment:
| Q |
393 |
aagtaattgctaatgagccatatcccagcttgttactttcacatatatcaaattctacatctagaattatgttaagactatccaataaaagcagggaaat |
492 |
Q |
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| T |
33034070 |
aagtaattgctaatgagccatatcccagcttgttactttcacatatatcaaattctacatctagaattatgttaagactatccaataaaagcagggaaat |
33033971 |
T |
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| Q |
493 |
ttatgattcatcctttgcttc |
513 |
Q |
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| T |
33033970 |
ttatgattcatcctttgcttc |
33033950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 17075608 - 17075653
Alignment:
| Q |
416 |
cccagcttgttactttcacatatatcaaattctacatctagaatta |
461 |
Q |
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| T |
17075608 |
cccaactttttactttcacatatatcaaattctccatctataatta |
17075653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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