View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_low_5 (Length: 488)
Name: NF20064_low_5
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 36866307 - 36866759
Alignment:
| Q |
18 |
actttatgctgcaatcttgccattgaaaccataaaacttgaaccaaaatccaagttcccctcataaccttgatgatcaaaacatgatgacgaccaacaat |
117 |
Q |
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| T |
36866307 |
actttatgctgcaatcttgccattgaaaccataaaacttgaaccaaaaaccaagttcccctcataaccttgatgatcaaaacatgatgacgaccaacaat |
36866406 |
T |
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| Q |
118 |
atgcaacaccacttaacaaaatcattagtagtaatgaactaactcttctcatcgcataaagaacacctcgaaagctgttgtattcgtttaaatttgattc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36866407 |
atgcaacaccacttaacaaaatcattagtagtaatgaactaactcttctcatcgcgtaaagaacacctcgaaagctgttgtattcgtttaaatttgattc |
36866506 |
T |
|
| Q |
218 |
caaagacatgttctggtttagactttgagacaatgcttgaattcttgtttccatcatgcttttattttcttcttccattcctataatctccctttgacaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36866507 |
caaagacatgttctggtttagactttgagacaatgcttgaattcttgtttccatcatgcttttattttcttcttccattcctataatctccctttgacaa |
36866606 |
T |
|
| Q |
318 |
atgttcattgctctaataacctgcatataaaatatgtatgtatgttagacatgttgaataaacttgattgagtttttccaatacataaagcttttaaaag |
417 |
Q |
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| T |
36866607 |
atgttcattgctctaataacctgcatataaaatatgtatgtatgttagacatgttgaataaacttgattgagtttttccaatacataaagcttttaaaag |
36866706 |
T |
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| Q |
418 |
aatttgtaacaaaaaacaaaagcttttgacagaactttggagcataattttat |
470 |
Q |
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| T |
36866707 |
aatttgtaacaaaaaacaaaagcttttgacagaactttggagcataattttat |
36866759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 641710 - 641801
Alignment:
| Q |
95 |
aaaacatgatgacgaccaacaatatgcaacaccacttaacaaaatcattagtagtaatgaactaactcttctcatcgcataaagaacacctc |
186 |
Q |
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|||||| || || ||||||||||| |||| ||||| | || |||||| || |||||||||||||| || ||||| ||| |||||||||||| |
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| T |
641710 |
aaaacaagaggaagaccaacaataagcaagtccactaagcagaatcatcagaagtaatgaactaacactcctcattgcaaaaagaacacctc |
641801 |
T |
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