View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_low_6 (Length: 451)
Name: NF20064_low_6
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 58 - 436
Target Start/End: Original strand, 24771698 - 24772076
Alignment:
| Q |
58 |
ggcatcctcacgttttcatataatctttcttcagttttagccagtttcgttcggaaggttgatatgtagaatctttgtctaatgttttaaaaattagtcc |
157 |
Q |
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| T |
24771698 |
ggcatcctcacgttttcatataatctttcttcagttttagccagttccgttcggaaggttgatatgtagaatctttgtctaatgttttaaaaattagtcc |
24771797 |
T |
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| Q |
158 |
ctcacagctggaaatcaagaaacaagccaaatgataaattatctagttaaaattaatgaaagagacaccaggcgtgaaaagacctgtgaaaattatatat |
257 |
Q |
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| T |
24771798 |
ctcacagctggaaatcaagaaacaagccaaatgataaattatctagttaaaattaatgaaagagacaccaggcgtgaaaagacctgtgaaaattatatat |
24771897 |
T |
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| Q |
258 |
accaaagtaaagagcatactgaattatgtttatatgatgcatatttttaactgaaattgtgaagtttctatcttcataaatttaaattaaactggaagaa |
357 |
Q |
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| T |
24771898 |
accaaagtaaagagcatactgaattatgtttatatgatgcatatttttaactgaaattgtgaagtttctatcttcataaatttaaattaaactggaagaa |
24771997 |
T |
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| Q |
358 |
tcagttaagaccttgcatcaacagatttgtcaagaaacttctgtatttccttagcatcgtttgatattaatgacgttga |
436 |
Q |
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| T |
24771998 |
tcagttaagaccttgcatcaacagatttgtcaagaaacttctgtatttccttagcatcgtttgatattaatgacattga |
24772076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 21003697 - 21003639
Alignment:
| Q |
137 |
taatgttttaaaaattagtccctcacagctggaaatcaagaaacaagccaaatgataaa |
195 |
Q |
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| T |
21003697 |
taatgttttaataattaatccctcacagctgaaaatcaagagataaggcaaatgataaa |
21003639 |
T |
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