View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_low_8 (Length: 376)
Name: NF20064_low_8
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_low_8 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 31214745 - 31214382
Alignment:
| Q |
13 |
atctccaattacttccatcgagttgttgttgnnnnnnncgaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataataaattgtgatg |
112 |
Q |
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| T |
31214745 |
atctccaattacttccatcgagttgttgttgtttttttggaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataataaattgtgatg |
31214646 |
T |
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| Q |
113 |
taggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttgatttggtttcaat |
212 |
Q |
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| T |
31214645 |
taggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttgatttggtttcaat |
31214546 |
T |
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| Q |
213 |
gcgtatattaaacttttttcaattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatcttacattgcattcgttagttcatgg |
312 |
Q |
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| T |
31214545 |
gcgtatattaaacttttttcaattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatcttacattgcattcgttagttcatgg |
31214446 |
T |
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| Q |
313 |
caggacagacaatgccgacacagacatgtggtaggacagatgatattagtgcgagaagatattt |
376 |
Q |
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| T |
31214445 |
taggacagacaatgccgacacggacatgtggtaggacagatgatattagtgtgagaagatattt |
31214382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 30499081 - 30499388
Alignment:
| Q |
13 |
atctccaattacttccatcgagttgttgttgnnnnnnncgaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataataaattgtgatg |
112 |
Q |
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|||||||||||||||||| |||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30499081 |
atctccaattacttccatagagtagttgttgtttttttcgaaaaagaaattgtaatgtaatatatgaagtgaagaaaagggaatataataaattgtgatg |
30499180 |
T |
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| Q |
113 |
taggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttgatttggtttcaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
30499181 |
taggtgtggcttttgttgaaatgaaatgaaatgtgcaag----ttggttagagggttgaattgtgaatgtgtgtgatatttgatttgattt-----caat |
30499271 |
T |
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| Q |
213 |
gcgtatattaaactttttt-caattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatc-----ttacattgcattcgttagt |
306 |
Q |
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||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
30499272 |
gcgtataataaactttttttcatttcaattggtaaggtttggagaattgcatttttgatgatatcatgatttgatcttacattacattgcattcgttagt |
30499371 |
T |
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| Q |
307 |
tcatggcaggacagaca |
323 |
Q |
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|||||| |||||||||| |
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| T |
30499372 |
tcatggtaggacagaca |
30499388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 31214870 - 31214909
Alignment:
| Q |
285 |
atcttacattgcattcgttagttcatggcaggacagacaa |
324 |
Q |
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| T |
31214870 |
atcttacattgcattcgttagttcatggtaggacagacaa |
31214909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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