View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20064_low_9 (Length: 366)
Name: NF20064_low_9
Description: NF20064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20064_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 51846062 - 51845720
Alignment:
| Q |
16 |
tcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacattacacatgaatgtgtataaatgactata |
115 |
Q |
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| T |
51846062 |
tcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacattacacatgaatgtgtataaatgactata |
51845963 |
T |
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| Q |
116 |
aaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagcgttaccatgcaagacatataacaagctt |
215 |
Q |
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| T |
51845962 |
aaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagcgttaccatgcaagacatataacaagctt |
51845863 |
T |
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| Q |
216 |
cctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatattacggtttctaagcctcccaaaccgtc |
315 |
Q |
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| T |
51845862 |
cctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatattacggtttctaagcctcccaaaccgtc |
51845763 |
T |
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| Q |
316 |
tcatctcggcatcaaatatatctctgcttactttattcatctc |
358 |
Q |
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| T |
51845762 |
tcatctcggcatcaaatatatctctgcttactttattcatctc |
51845720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 331
Target Start/End: Original strand, 18628238 - 18628379
Alignment:
| Q |
190 |
taccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatatt |
289 |
Q |
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| T |
18628238 |
taccgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatatt |
18628337 |
T |
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| Q |
290 |
acggtttctaagcctcccaaaccgtctcatctcggcatcaaa |
331 |
Q |
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| T |
18628338 |
agcatgtctaatcctcccaaactgtctcatctcagcatcaaa |
18628379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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