View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20065_high_2 (Length: 524)
Name: NF20065_high_2
Description: NF20065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20065_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 519
Target Start/End: Complemental strand, 54182759 - 54182243
Alignment:
| Q |
16 |
ctagcagggatcctcttaagcttccttgggctgagcttggaattgacattgttattgaggtaaattcaaacc-------------cacaaaattaaaata |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
54182759 |
ctagcagggatcctcttaagcttccttgggctgagcttggaattgacattgttattgaggtaaattcaaaccatcaatcgtaggccacaaaatgaaaata |
54182660 |
T |
|
| Q |
103 |
caagcatatgattggttcatttcttaaaaatcaacatagtactgttttatgaaaaatacaaaaagaaattttttctaaatgtactcgagagaannnnnnn |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
54182659 |
caagcatatgattggttcatttcttaaaaatcaacatagtactgttttatgaaaaatacaaaaagaaaaattttctgaatgtactcgagagaattttttt |
54182560 |
T |
|
| Q |
203 |
aaagttaatgaatttttgttcagggaactggagtgtttgtggatggccctggagctggaaaacacatccaagcaggtgccaagaaagttatcatcacagc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54182559 |
aaagttaatgaatttttgttcagggaactggagtgtttgtggatggtcctggagccggaaaacacatccaagcaggtgccaagaaagttatcatcacagc |
54182460 |
T |
|
| Q |
303 |
tcctgcaaagggtgctgatattccaacttatgttgttggagtaaatgagcaagactacggccatgaagtagccgacatcataaggtaaggcttaatattt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54182459 |
tcctgcaaagggtgctgatattccaacttatgttgttggagtaaatgagcaagactacggccatgaagtagccgacatcataaggtaaggcttaatattt |
54182360 |
T |
|
| Q |
403 |
aagttgttgacctcgttgcggatgttggggttgagaacaagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgataattcata |
502 |
Q |
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| T |
54182359 |
aagttgttgacctcgttgcggatgttgaggttgagaacaagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgattattcata |
54182260 |
T |
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| Q |
503 |
ttcgttcctatgcttct |
519 |
Q |
| |
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||||||| |||| |||| |
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| T |
54182259 |
ttcgttcttatgtttct |
54182243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 130 - 519
Target Start/End: Complemental strand, 19749154 - 19748765
Alignment:
| Q |
130 |
aaatcaacatagtactgttttatgaaaaatacaaaaagaaattttttctaaatgtactcgagagaannnnnnnaaagttaatgaatttttgttcagggaa |
229 |
Q |
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||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19749154 |
aaatcaacatagtactgttttatgaaaaatatgagaacaaattttttctgaatgtactcgagagaatttttt-aaagttaatgaatttttgttcagggaa |
19749056 |
T |
|
| Q |
230 |
ctggagtgtttgtggatggccctggagctggaaaacacatccaagcaggtgccaagaaagttatcatcacagctcctgcaaagggtgctgatattccaac |
329 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19749055 |
ctggattgtttgtggatggccctggagccggaaaacacatccaagcaggtgccaagaaagttatcatcacagctcctgcaaaaggtgctgatattccaac |
19748956 |
T |
|
| Q |
330 |
ttatgttgttggagtaaatgagcaagactacggccatgaagtagccgacatcataaggtaagg-cttaatatttaagttgttgacctcgttgcggatgtt |
428 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
19748955 |
ttatgttgttgtagtaaatgagcaagactacggccatgaagtagccaacatcataaggtaaggttttaatatttaagttgttgacctcgttgcaaatgtt |
19748856 |
T |
|
| Q |
429 |
ggggttgagaacaagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgataattcatattcgttcctatgcttct |
519 |
Q |
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| T |
19748855 |
gaggttgaaaacaagggtatcacaactgagaatgtcaatgcaagatagtgttgtgttttgattgattattcatattcattcttatgtttct |
19748765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 343 - 505
Target Start/End: Original strand, 5076411 - 5076573
Alignment:
| Q |
343 |
gtaaatgagcaagactacggccatgaagtagccgacatcataaggtaaggctt-aatatttaagttgttgacctcgttgcggatgttggggttgagaaca |
441 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
5076411 |
gtaaatgagcaagactacggccatgaagtagccgacatcataaggtaaggctttaatatttaagttgttgacctcgttgtgaatgttgaggttgagaaca |
5076510 |
T |
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| Q |
442 |
agggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgataattcatattc |
505 |
Q |
| |
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||||||||||| |||||||||||||| ||||||| || ||||||||||||||| |||||||||| |
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| T |
5076511 |
agggtatcacaactgagaatgtcaatgcaagataatgatgtgttttgattgat-attcatattc |
5076573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 343 - 519
Target Start/End: Complemental strand, 7412814 - 7412638
Alignment:
| Q |
343 |
gtaaatgagcaagactacggccatgaagtagccgacatcataaggtaaggctt-aatatttaagttgttgacctcgttgcggatgttggggttgagaaca |
441 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
7412814 |
gtaaatgagcaagactacggccatgaagtagctgacatcataaggttaggctttaatatttaagttgttgacctcgttgcggatgttgaggttgagagca |
7412715 |
T |
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| Q |
442 |
agggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgataattcatattcgttcctatgcttct |
519 |
Q |
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||||||||||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||| |||| |||| |
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| T |
7412714 |
agggtatcacaaatgagaatgtcaatgcaagatagtgctgtgttttgattgat-attcatattcattcttatgtttct |
7412638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 353 - 519
Target Start/End: Complemental strand, 6224975 - 6224808
Alignment:
| Q |
353 |
aagactacggccatgaagtagccgacatcataaggtaaggcttaat-atttaagttgttgacctcgttgcggatgttggggttgagaacaagggtatcac |
451 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |||||| |||||||||||| ||||||| |
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| T |
6224975 |
aagactacggccatgaagtagccgacatcataaggtaaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcat |
6224876 |
T |
|
| Q |
452 |
agctgagaatgtcaatacaagatagtgttgtgttttgattgataattcatattcgttcctatgcttct |
519 |
Q |
| |
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|| ||||||||||||| ||||||||||| ||||||| |||||| |||||||||| |||||||| |||| |
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| T |
6224875 |
agttgagaatgtcaatgcaagatagtgtcgtgtttttattgattattcatattcattcctatgtttct |
6224808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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