View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20065_low_1 (Length: 597)
Name: NF20065_low_1
Description: NF20065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20065_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 523; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 12 - 586
Target Start/End: Complemental strand, 25062677 - 25062103
Alignment:
| Q |
12 |
gagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgcac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25062677 |
gagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgcac |
25062578 |
T |
|
| Q |
112 |
ctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaac |
211 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25062577 |
ctaaactataatgtttcaaatttgtttatccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaat |
25062478 |
T |
|
| Q |
212 |
agtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcaccttat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25062477 |
agtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaactgaatttggagaagattcaccttat |
25062378 |
T |
|
| Q |
312 |
gatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatattgcgggcattatttggt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25062377 |
gatatagtttctcttgatgggaagacaactgttaattactccaacgtgcctttccctgaagatgtagactggccttgatatattgcgggcattatttggt |
25062278 |
T |
|
| Q |
412 |
ctcttattcgtgaatgattaggtatatctttagccgatccgtcatgtatatggggtcatttgattcagtttgtttagttaggaagttattctagatccct |
511 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
25062277 |
ctcttattcgtgaatgattaggtatatcttcagccgatccgtcatgtatattgggtcatttgattcagtttgtttagttaggaagttattccagatccct |
25062178 |
T |
|
| Q |
512 |
tcgttatactttgttgttggtttggttctctagcctgtgggtgatttagaaagaaaggaacaagagtatttttaa |
586 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||| |||||||| |
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|
| T |
25062177 |
tcattatactttgttgttggtttggttctcgagcatgtgggtaatttggaaagaaaggaacaagaggatttttaa |
25062103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 586
Target Start/End: Complemental strand, 25071380 - 25070806
Alignment:
| Q |
12 |
gagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgcac |
111 |
Q |
| |
|
|||||||| || |||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| | ||||| |
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|
| T |
25071380 |
gagatgaaaatcaaggccattgatacgtggtctgcaattcaaaaaagagatgattggagagatttttgtttcatgtaagtatggtcgcatttgtatgcac |
25071281 |
T |
|
| Q |
112 |
ctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaac |
211 |
Q |
| |
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| |||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25071280 |
caaaactaaaatattacaaatttgtttttcaataatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaat |
25071181 |
T |
|
| Q |
212 |
agtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcaccttat |
311 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
25071180 |
agtaacaaaggagatattgaatgtcatcaaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattcaccttat |
25071081 |
T |
|
| Q |
312 |
gatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatattgcgggcattatttggt |
411 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| || |
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|
| T |
25071080 |
gatatggttactcttgatgggaagacaa---ttaatttctccaatgtgcctttccctgaagatgtagattggccttgatatattgtttgtattatttagt |
25070984 |
T |
|
| Q |
412 |
ctcttattcgtgaatg---attaggtatatctttagccgatccgtcatgtatatggggtcatttgattcagtttgtttagttaggaagttattctagatc |
508 |
Q |
| |
|
|| |||||| | |||| || ||| |||||| ||| |||||| |||| ||| || ||||||||||||| ||||| ||| ||| ||||||| ||||| |
|
|
| T |
25070983 |
cttttattcataaatggttcttgggtgtatcttcagctgatccgccatgcataccggatcatttgattcagcttgttcagtaaggcggttattccagatc |
25070884 |
T |
|
| Q |
509 |
ccttcgttatactttgttgttggtttggttctctagcctgtgggtgatttagaaagaaaggaacaagagtatttttaa |
586 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||| |||||||| |
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|
| T |
25070883 |
cattcgttctactttgttgttggtttggttctcttacatgtgggtgatttggaaagaaaggagcaagatgatttttaa |
25070806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 395
Target Start/End: Complemental strand, 25084286 - 25083904
Alignment:
| Q |
12 |
gagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgcac |
111 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||| | ||||| |
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|
| T |
25084286 |
gagatgaaaataaaggccattgatttgtggtctgcaattcagaaaatagatgattggagagatgtttgtttcgtgtaagtacgatctcatttgtatgcac |
25084187 |
T |
|
| Q |
112 |
ctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaac |
211 |
Q |
| |
|
|||| ||| ||| |||||||||||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
25084186 |
ctaa-ctaaaatatttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacaaggggagtgaaat |
25084088 |
T |
|
| Q |
212 |
agtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcaccttat |
311 |
Q |
| |
|
||||||||| || ||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||||| |
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|
| T |
25084087 |
agtaacaaaagagatattgaatgtcatcgaagaagcagagtggaaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttat |
25083988 |
T |
|
| Q |
312 |
gatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatatt |
395 |
Q |
| |
|
||||| ||||||||||||||||||| || | |||||| |||| |||||||||| ||||| | |||||| ||||||||||||||| |
|
|
| T |
25083987 |
gatatggtttctcttgatgggaagataaatattaatttctccgatgtgccttttcctgatggtgtagagtggccttgatatatt |
25083904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 107 - 394
Target Start/End: Complemental strand, 25089973 - 25089683
Alignment:
| Q |
107 |
tgcacctaaactataatgtttcaaatttgtttctccgtaat---ttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgagggg |
203 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||| || |||| ||| || |||||||||||||||||||||||||||||| ||| |||||| ||||||| |
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|
| T |
25089973 |
tgcacctaatctaaaatgttttaaatttgtttatcaataataatttagtttggtggtttgattatttcttagtgatggagtacatttatcaactgagggg |
25089874 |
T |
|
| Q |
204 |
agtgaaacagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagatt |
303 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| || || |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |
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|
| T |
25089873 |
agtgaaatagtaacaaaggagatattgaatgtcataaagaaagcagagtgggaaccaagtctatattgtaagttaatgccagctgaatttggagaagata |
25089774 |
T |
|
| Q |
304 |
caccttatgatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatat |
394 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
25089773 |
caccttatgatatggtttctcttgacgggaagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatat |
25089683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 25058464 - 25058166
Alignment:
| Q |
15 |
atgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttattt--gcacc |
112 |
Q |
| |
|
|||||||| |||| ||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||||||||| || |||||| ||| | | || |
|
|
| T |
25058464 |
atgaacatcaaggccattgatttgtggtctttaattcagagaagagatgattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccc |
25058365 |
T |
|
| Q |
113 |
taaacta-taa---tgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtga |
208 |
Q |
| |
|
|| | || ||| | | ||||||||| | || | |||||||||| || |||| |||||| ||||||||||| ||||| | || |||||||||||| |
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|
| T |
25058364 |
tatattaataaatatatatcaaatttgcatttcaatgatttaattagatgatttggttattttttagtgatggaattcatttctctgctgaggggagtga |
25058265 |
T |
|
| Q |
209 |
aacagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcacc |
307 |
Q |
| |
|
|| || ||||||||||| | || || ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
25058264 |
aatggtgtcaaaggaaataattaaggttatcaaagaagcagagtgggaaccaaatctatattggaagacaatgccagttgaatttggagaagattcacc |
25058166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 25090578 - 25090491
Alignment:
| Q |
12 |
gagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctc |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
25090578 |
gagatgaaaataaaggtcattgatatgtggtctgcaatttagaaaagagatgattggaaagatgtttgtttcatgtaagtatgatctc |
25090491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 25094759 - 25094670
Alignment:
| Q |
12 |
gagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcat |
101 |
Q |
| |
|
|||||||| || |||| ||||||| ||||||||||||| || ||||| ||| | ||| || ||||||| |||| |||||| || |||||| |
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|
| T |
25094759 |
gagatgaatatcaaggccattgatctgtggtctgcaatccaaaaaagggataactggcgaaatgtttgcttcacgtaagtttgctctcat |
25094670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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