View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20065_low_2 (Length: 559)

Name: NF20065_low_2
Description: NF20065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20065_low_2
NF20065_low_2
[»] chr6 (5 HSPs)
chr6 (11-311)||(13146571-13146872)
chr6 (477-543)||(13146964-13147030)
chr6 (491-543)||(13101333-13101385)
chr6 (381-425)||(13146868-13146912)
chr6 (199-243)||(20550026-20550070)
[»] chr7 (3 HSPs)
chr7 (14-130)||(24511156-24511272)
chr7 (14-82)||(24510068-24510136)
chr7 (77-130)||(24509334-24509387)
[»] scaffold0499 (3 HSPs)
scaffold0499 (278-353)||(3266-3341)
scaffold0499 (378-429)||(3609-3660)
scaffold0499 (491-524)||(3777-3810)
[»] chr8 (1 HSPs)
chr8 (62-127)||(19400750-19400814)
[»] chr5 (1 HSPs)
chr5 (80-130)||(15162677-15162727)
[»] chr4 (1 HSPs)
chr4 (32-97)||(46632293-46632358)
[»] chr1 (1 HSPs)
chr1 (158-191)||(23545205-23545238)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 13146571 - 13146872
Alignment:
Q  11 aagcataggtcataaccattggctatcaaaggtccaaacactatatcaccattaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaa 110  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13146571 aagcataggtcataaccattagctatcaaaggtccaaacactatatcacctttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaa 13146670  T
Q  111 aattaccatgactcaaaccaagcattcgatcaata--agaggcacacgaaattagggttgagaagagagagacaatgagggcaccaatgctatcatcaag 208  Q
    ||||||||||||||||||||||||||| |||||||  |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13146671 aattaccatgactcaaaccaagcattccatcaataagagagactcacgaaattagggttgagaagagagagacaatgagggcaccaatgctatcatcaag 13146770  T
Q  209 cagtgttgttaaatagcggctaaaacatagcggaaaatagatatttaaacatacaccnnnnnnnnnnttgatgtttaaatacacaaaagacacaaacaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||          ||||||||||||||||||||||||||||||| |    
T  13146771 cagtgttgttaaatagcggctaaaacatagcggaaaatagatgattaaacaaacacc-aaaaaaaatttgatgtttaaatacacaaaagacacaaacatt 13146869  T
Q  309 aga 311  Q
    |||    
T  13146870 aga 13146872  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 477 - 543
Target Start/End: Original strand, 13146964 - 13147030
Alignment:
Q  477 aataaccagtggtatgaattacagcattcttgaatctcaactgatgaacttcgaatttgaagttttt 543  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  13146964 aataactactggtatgaattacagtattcttgaatctcaactgatgaactttgaatttgaagttttt 13147030  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 13101385 - 13101333
Alignment:
Q  491 tgaattacagcattcttgaatctcaactgatgaacttcgaatttgaagttttt 543  Q
    |||||||||| |||||||||||||||||||||||||| || ||||||||||||    
T  13101385 tgaattacagaattcttgaatctcaactgatgaactttgactttgaagttttt 13101333  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 13146868 - 13146912
Alignment:
Q  381 ttagagaaagtagagatataaagaattttttcaagtgcaattgca 425  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  13146868 ttagagaaagtagagatatgaagaattttttcaagtgcaattgca 13146912  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 20550026 - 20550070
Alignment:
Q  199 tatcatcaagcagtgttgttaaatagcggctaaaacatagcggaa 243  Q
    |||||||||||||||||||||||||||| |||||||||| |||||    
T  20550026 tatcatcaagcagtgttgttaaatagcgtctaaaacatatcggaa 20550070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 24511156 - 24511272
Alignment:
Q  14 cataggtcataaccattggctatcaaaggtccaaacactatatcaccattaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaaat 113  Q
    ||||||||||||| ||| |||||||||||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24511156 cataggtcataactattagctatcaaaggtgcaaacaatatatcacatttaaattcaatatgtaagtatatcataaagtagaacgtaaccaaagtaaaat 24511255  T
Q  114 taccatgactcaaacca 130  Q
    |||||||||||||||||    
T  24511256 taccatgactcaaacca 24511272  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 24510136 - 24510068
Alignment:
Q  14 cataggtcataaccattggctatcaaaggtccaaacactatatcaccattaaattcaatatgtaagtat 82  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  24510136 cataggtcataaccattagctatcaaaggtccaaacactatatcacatttaaattcaatatgtaagtat 24510068  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 24509387 - 24509334
Alignment:
Q  77 aagtatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaacca 130  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24509387 aagtatatcataaagtggaacgaaaccaaagtaaaattaccatgactcaaacca 24509334  T

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Target: scaffold0499 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 3266 - 3341
Alignment:
Q  278 gatgtttaaatacacaaaagacacaaacaatagatgattaggtttcgccaactttgcacatgtctatcacaataga 353  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||||||||||||||||    
T  3266 gatgtttaaatacacaaaagacacaaacaatagatgattcggtttgaccaactatgcacatgtctatcacaataga 3341  T

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Target: scaffold0499; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 3609 - 3660
Alignment:
Q  378 tccttagagaaagtagagatataaagaattttttcaagtgcaattgcaggtg 429  Q
    ||||||||||||||| |||||| ||||||||| |||| ||||||||||||||    
T  3609 tccttagagaaagtatagatatgaagaattttgtcaactgcaattgcaggtg 3660  T

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Target: scaffold0499; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 524
Target Start/End: Original strand, 3777 - 3810
Alignment:
Q  491 tgaattacagcattcttgaatctcaactgatgaa 524  Q
    |||||||||| |||||||||||||||||||||||    
T  3777 tgaattacagaattcttgaatctcaactgatgaa 3810  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 19400814 - 19400750
Alignment:
Q  62 ttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaa 127  Q
    ||||||||||||| || |||||| ||||||||||||||||||||| ||||| |||||||| |||||    
T  19400814 ttaaattcaatatttatgtatataataaagtagaacgaaaccaaattaaaa-taccatgattcaaa 19400750  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 15162677 - 15162727
Alignment:
Q  80 tatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaacca 130  Q
    |||||||||| |||||| |||||||||||||||||||||||| | ||||||    
T  15162677 tatatcataatgtagaatgaaaccaaagtaaaattaccatgattaaaacca 15162727  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 46632293 - 46632358
Alignment:
Q  32 gctatcaaaggtccaaa-cactatatcaccattaaattcaatatgtaagtatatcataaagtagaac 97  Q
    |||| |||||||||||| ||||||||||| ||  |||||||||||||  ||||||||||||||||||    
T  46632293 gctaccaaaggtccaaaacactatatcac-atataattcaatatgtatctatatcataaagtagaac 46632358  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 23545205 - 23545238
Alignment:
Q  158 aattagggttgagaagagagagacaatgagggca 191  Q
    |||||||||||||||||||||||||| |||||||    
T  23545205 aattagggttgagaagagagagacaacgagggca 23545238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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