View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20065_low_4 (Length: 516)
Name: NF20065_low_4
Description: NF20065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20065_low_4 |
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| [»] scaffold0152 (1 HSPs) |
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Alignment Details
Target: scaffold0152 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 416
Target Start/End: Complemental strand, 11719 - 11310
Alignment:
| Q |
7 |
tagataattctcacgttcattctgagttaaattcgaccagtttactctatatgctactgcttgaataaatattaatacaaattgagacaatgatgaaaca |
106 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11719 |
tagaaaattctcacgttcattctaagttaaattcgaccagtttactctatatgctactgcttgaataaatattaatacaaattgagacaatgatgaaaca |
11620 |
T |
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| Q |
107 |
taaaggccattgcttctcttcatttcatcatcaatgggtccagtacaaacatataatagagaacaaacttctactaattaagaaggaaatacaacttgtt |
206 |
Q |
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| T |
11619 |
taaaggccattgcttctcttcatttcatcatcaatgggtccagtataaacatataatagagaacaaacttctactaattaagaaggaaatacaacttgtt |
11520 |
T |
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| Q |
207 |
agacaaaacataatgaaaatactaaatgaagatagggattactaaagacat-nnnnnnnnnnnnnnnnnnnnncaacttagaaatagacaaggtcttgcc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
11519 |
agacaaaacataatgaaaatactaaatgaagatagggattactaaagacataaaaaaacgaaaaaaaccaaaacaacttagaaatagacaaagtcttgcc |
11420 |
T |
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| Q |
306 |
aatttaaatcagtccacacttgcagagtatcgttacttcgaacaaccggtgcaccaaaccatcacattagaaccttcacaaagccttctagcaagaacca |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11419 |
aatttaaatcagtccacacttgcagagtatcgttacttcgaacaaccggtgcacc-aaccatcacattagaaccttcacaaagccttctagcaagaacca |
11321 |
T |
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| Q |
406 |
ttcgattgaaa |
416 |
Q |
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||||||||||| |
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| T |
11320 |
ttcgattgaaa |
11310 |
T |
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