View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20065_low_5 (Length: 490)
Name: NF20065_low_5
Description: NF20065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20065_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 47684374 - 47683923
Alignment:
| Q |
17 |
caaaggggaagaaaacagagacaacatgacttgctgaaggaaacatagacgagattgaaaggaaacagagatgacatgggtcagatcgaaatgagaaaaa |
116 |
Q |
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| T |
47684374 |
caaaggggaagaaaacagagacaacatgactagctgaaggaaacgtagacgagattgaaaggaaacagagatgacatgggtcagatcgaaacgagaaaaa |
47684275 |
T |
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| Q |
117 |
cattaaaacttgtgtaatacaaatcggaaagaaccatggacacctcgaaagtaaaggagcggtggacaggtcggaagcaaacgaagccatggagagatga |
216 |
Q |
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| T |
47684274 |
cattaaaacttgtgtaatacaaatcggaaagaaccatggacacatcgaaagtaaaggagcggtggacaggtcggaaggaaacgaagccatggagagatga |
47684175 |
T |
|
| Q |
217 |
gaagaagaagatagagccatggaggttttcaaacacagtagtactctatcatggtcaaggaaacctcccaaggaaattttgttttaatcatttataaatg |
316 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47684174 |
gaagaaga---tagagccatggaggttttcaaacacagtagtactctatcatggtcaaggaaacctcccaaggaaattttgttttaatcatttataaatg |
47684078 |
T |
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| Q |
317 |
tgaatttttaagggaatgcaacgagtgtattagtgagtttttataaaattcagtaaattcaatgtattgcaagttgcaacttttgtaatatttgactttt |
416 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47684077 |
tgaatttttaagggaatgcaacgactgtattagtgagtttttataaaattcagtaaattcaatgtattgcaagttacaacttttgtaatatttgactttt |
47683978 |
T |
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| Q |
417 |
tgaagagaatccttgaagatccaaacaaattttaagactcaaaaaatcttcacaa |
471 |
Q |
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| T |
47683977 |
tgaagagaatccttgaagatccaaacaaattttaagactcaaaaaatcttcacaa |
47683923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 28579517 - 28579596
Alignment:
| Q |
20 |
aggggaagaaaacagagacaacatgacttgctgaaggaaacatagacgagattgaaaggaaacagagatgacatgggtca |
99 |
Q |
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|||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
28579517 |
aggggaaggaaacagagacaacatgactaacataaggaaacatagacgagatcgaaaggaaacagagataacatgggtca |
28579596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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