View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20065_low_7 (Length: 366)
Name: NF20065_low_7
Description: NF20065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20065_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 31636269 - 31636605
Alignment:
| Q |
20 |
atctttggatcactgtcttcgcatgtaagctccatattaggatcagaaaaac---cacattcctttcctctgttttttccccagaatggatacttgaggt |
116 |
Q |
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| T |
31636269 |
atctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaatggatacttgaggt |
31636368 |
T |
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| Q |
117 |
ttgtgacactgtc---tccgcagtcaaaagcttcgttgcagtctgtgtaatcatcgcacatacacgtttgaatattgatgatgaagatcatcaaaagtat |
213 |
Q |
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| T |
31636369 |
ttgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgttggaatattgatgatgaagatcatcaaaagcat |
31636468 |
T |
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| Q |
214 |
cacggagnnnnnnngaaaagaagatggatgaagaagaggtttcattcttgaagccgaaggaagaaagttagaataggtttagttggaaagaggaatagca |
313 |
Q |
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| T |
31636469 |
cacggagaaaaagagaaaagaagatggatgaagaagaggtttcattcttgcagccgaagaaagaaagttagaataggtttagttggaaagaggaatagca |
31636568 |
T |
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| Q |
314 |
-aaaaagggatataaaaatcaaagactgaaataaacaaa |
351 |
Q |
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| T |
31636569 |
ctaaaagggatat--aaatcaatgtctgaaataaacaaa |
31636605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 31621274 - 31621469
Alignment:
| Q |
20 |
atctttggatcactgtcttcgcatgtaagctccatattaggatcagaaaaac---cacattcctttcctctgttttttccccagaatggatacttgaggt |
116 |
Q |
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| T |
31621274 |
atctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaatggatacttgaggt |
31621373 |
T |
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| Q |
117 |
ttgtgacactgtc---tccgcagtcaaaagcttcgttgcagtctgtgtaatcatcgcacatacacgtttgaatattgatgatgaagatcatcaaaa |
209 |
Q |
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| T |
31621374 |
ttgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgttggaatattgatgatgaagatcatcaaaa |
31621469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 31616528 - 31616733
Alignment:
| Q |
20 |
atctttggatcactgtcttcgcatgtaagctccatattaggatcagaaaa------accacattcctttcctctgttttttccccagaatggatacttga |
113 |
Q |
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| T |
31616528 |
atctttggaacactttcttcgcatgtaagctccatattaggatcagaagaaacaccaccacaatattttttcctattttctccccagaatggatacttga |
31616627 |
T |
|
| Q |
114 |
ggtttgtgacactgtctccgcagtcaaaagcttcgttgcagtctgtgta---------atcatcgcacatacacgtttgaatattgatgatgaagatcat |
204 |
Q |
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| T |
31616628 |
tgttcgtgatgctgcttccgcagttaaaagcgttgttacagtttgtgtattggtcgtcatcatcacacatacacgttggaatattgatgattgagatcaa |
31616727 |
T |
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| Q |
205 |
caaaag |
210 |
Q |
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|||||| |
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| T |
31616728 |
caaaag |
31616733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 31597424 - 31597496
Alignment:
| Q |
36 |
cttcgcatgtaagctccatattaggatcagaaaaaccacattcctttcctctgttttttccccagaatggata |
108 |
Q |
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||||||||||||||| |||||||||||| |||| |||||| | |||||||| |||| ||||||||||||||| |
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| T |
31597424 |
cttcgcatgtaagcttcatattaggatcggaaacaccacaataatttcctctattttctccccagaatggata |
31597496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 31606603 - 31606751
Alignment:
| Q |
20 |
atctttggatcactgtcttcgcatgtaagctccatattaggatcagaaaa------accacattcctttcctctgttttttccccagaatggatacttga |
113 |
Q |
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||||||||| |||| |||||||||||||| |||||||||||||| ||| | |||||| | || |||| |||| |||||||||||||||||||| |
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| T |
31606603 |
atctttggaacactttcttcgcatgtaagatccatattaggatcggaagaaacaccaccacaatatttatctctattttctccccagaatggatacttga |
31606702 |
T |
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| Q |
114 |
ggtttgtgacactgtctccgcagtcaaaagcttcgttgcagtctgtgta |
162 |
Q |
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| T |
31606703 |
tgttcgcgatgctgcttccgcagttaaaagcattgttgcagtttgtgta |
31606751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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