View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20065_low_9 (Length: 276)
Name: NF20065_low_9
Description: NF20065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20065_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 32892725 - 32892596
Alignment:
| Q |
14 |
agaccaaagaaaaaggactatgaagtgaaatagaaatagtataaaatttataagaaggttccaggaatcaagggtcgagatcatgtgactagacccataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32892725 |
agaccaaagaaaaaggactatgaagtgaaatagaaatagtataaaatttataagaaggttccaggaatcaagggtcgagatcatgtgactagacccataa |
32892626 |
T |
|
| Q |
114 |
gacaaggaaataacccaaactttgaggttc |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32892625 |
gacaaggaaataacccaaactttgaggttc |
32892596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 32892551 - 32892478
Alignment:
| Q |
188 |
atctgaattatccaaatcacactttgtgtttctttctacacactctctcatctatagttttgtgttatcattat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32892551 |
atctgaattatccaaatcacactttgtgtttctttctacacactctctcatctatagttttgtgttatcattat |
32892478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University