View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20066_high_2 (Length: 231)
Name: NF20066_high_2
Description: NF20066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20066_high_2 |
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| [»] chr6 (11 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 30955720 - 30955500
Alignment:
| Q |
11 |
caaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30955720 |
caaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcac |
30955621 |
T |
|
| Q |
111 |
cataaaccaacaatcgtcattccttttgcaatctcattttcttcaatggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtata |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30955620 |
cataaaccaacaatggtcattccttttgcaatctcattttcttcaatggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtata |
30955521 |
T |
|
| Q |
211 |
tccaatctggaaaatactcgc |
231 |
Q |
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||||||||||||||||||||| |
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| T |
30955520 |
tccaatctggaaaatactcgc |
30955500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 30945460 - 30945240
Alignment:
| Q |
11 |
caaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcac |
110 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30945460 |
caaaggttttggtggtatttcaaggatattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcac |
30945361 |
T |
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| Q |
111 |
cataaaccaacaatcgtcattccttttgcaatctcattttcttcaatggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtata |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |
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| T |
30945360 |
cataaaccaacaatagtcattccttttgcaatctcattttcttcaatggccatcactatgtcagatctcaaatcactatccgtttctagcttattgtata |
30945261 |
T |
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| Q |
211 |
tccaatctggaaaatactcgc |
231 |
Q |
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||||||||||||||||||||| |
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| T |
30945260 |
tccaatctggaaaatactcgc |
30945240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 31189180 - 31189319
Alignment:
| Q |
15 |
ggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccata |
114 |
Q |
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||||| |||||||||||||| | ||||||| || |||| ||||||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||| |
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| T |
31189180 |
ggtttaggtggtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccata |
31189279 |
T |
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| Q |
115 |
aaccaacaatcgtcattccttttgcaatctcattttcttc |
154 |
Q |
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|||| ||||| ||||||| |||||||||| | |||||| |
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| T |
31189280 |
aacccacaattgtcattctccttgcaatctcgtcttcttc |
31189319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 31145116 - 31145261
Alignment:
| Q |
9 |
agcaaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgc |
108 |
Q |
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||||| ||||| |||||||||||||| ||||||| || |||| ||||||||||| ||| |||||||||| |||| |||| |||| ||||||||||||| |
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| T |
31145116 |
agcaacggtttgggtggtatttcaagtgaattcatgttaacttctaacatttcaataactttactcattgtaggtctatcacttggaaatgtttgaatgc |
31145215 |
T |
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| Q |
109 |
accataaaccaacaatcgtcattccttttgcaatctcattttcttc |
154 |
Q |
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|||||||||| ||||| ||||||| |||||||||||| |||||| |
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| T |
31145216 |
accataaacccacaatagtcattctccttgcaatctcatcttcttc |
31145261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 31200987 - 31201104
Alignment:
| Q |
15 |
ggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccata |
114 |
Q |
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||||| |||||||||||||| | ||||||| || |||| ||||||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||| |
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| T |
31200987 |
ggtttaggtggtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccata |
31201086 |
T |
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| Q |
115 |
aaccaacaatcgtcattc |
132 |
Q |
| |
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|||| ||||| ||||||| |
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| T |
31201087 |
aacccacaattgtcattc |
31201104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 31230250 - 31230110
Alignment:
| Q |
14 |
aggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccat |
113 |
Q |
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|||||||||||||||||| | |||| || | ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
31230250 |
aggttttggtggtatttccaaacaattcttgttgccttctaacatttcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccat |
31230151 |
T |
|
| Q |
114 |
aaaccaacaatcgtcattccttttgcaatctcattttcttc |
154 |
Q |
| |
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||||| ||||| |||| || ||||||| |||| |||||| |
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| T |
31230150 |
aaacctacaatggtcaatctccttgcaatttcatcttcttc |
31230110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 31171435 - 31171574
Alignment:
| Q |
15 |
ggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccata |
114 |
Q |
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||||||||||| ||||| || |||||| || |||| ||||||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||| |
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| T |
31171435 |
ggttttggtggcatttccagtgaattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccata |
31171534 |
T |
|
| Q |
115 |
aaccaacaatcgtcattccttttgcaatctcattttcttc |
154 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||| |||||| |
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| T |
31171535 |
aacccacaatagtcattctccttgcaatctcatcttcttc |
31171574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 30961470 - 30961325
Alignment:
| Q |
9 |
agcaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatg |
107 |
Q |
| |
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||||| ||||||||||||||||| || || ||||||| || |||| |||||||||| ||| |||||||||| || | |||| || ||||||||||| |
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| T |
30961470 |
agcaatggttttggtggtatttccaatga-attcatgttaacttctaacatttcaactactttactcattgtaggcctgccattaggaaatgtttgaata |
30961372 |
T |
|
| Q |
108 |
caccataaaccaacaatcgtcattccttttgcaatctcattttcttc |
154 |
Q |
| |
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||||| ||||| ||||| ||||||| |||||||||||||||||||| |
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| T |
30961371 |
caccacaaacccacaatggtcattctctttgcaatctcattttcttc |
30961325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 31224975 - 31224830
Alignment:
| Q |
9 |
agcaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatg |
107 |
Q |
| |
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||||| ||||||||||| ||||| || || |||||||||| | || ||||||||||||||| |||||||||| || | |||||| || || |||||||| |
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| T |
31224975 |
agcaatggttttggtggcatttccaacga-attcatgctaacatctaacatttcaatcactttactcattgtaggcctatcattaggaaacgtttgaata |
31224877 |
T |
|
| Q |
108 |
caccataaaccaacaatcgtcattccttttgcaatctcattttcttc |
154 |
Q |
| |
|
||||| ||||| ||||| ||||||| ||||||||| || |||||| |
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| T |
31224876 |
caccacaaacctacaatggtcattctccttgcaatcttatcttcttc |
31224830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 31214664 - 31214580
Alignment:
| Q |
48 |
ccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatcgtcattc |
132 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||| ||||||||| | |||||||||||||||||| || || || ||||||| |
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| T |
31214664 |
ccttctaacatttcaataactctactcattgcaggtctatcatttggaagtgtttgaatgcaccataatcctactatggtcattc |
31214580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 30992952 - 30992807
Alignment:
| Q |
9 |
agcaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatg |
107 |
Q |
| |
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||||| ||||||||||||||||| || || ||| ||| | |||| |||||||||| ||| |||||||||| |||| |||| || ||||||||||| |
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| T |
30992952 |
agcaatggttttggtggtatttccaacga-attaatgtcaacttctaacatttcaactactttactcattgtaggtctgccattaggaaatgtttgaata |
30992854 |
T |
|
| Q |
108 |
caccataaaccaacaatcgtcattccttttgcaatctcattttcttc |
154 |
Q |
| |
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||||| |||| ||||| ||||| | ||||||||||||| |||||| |
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| T |
30992853 |
caccacaaactcacaatggtcatcctctttgcaatctcatcttcttc |
30992807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 44036118 - 44036038
Alignment:
| Q |
41 |
catgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaac |
121 |
Q |
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||||||||| |||||||| ||||||||| |||| ||||| |||| || | | || | ||||||||||||||| |||||||| |
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| T |
44036118 |
catgctaccatccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccacaaaccaac |
44036038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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