View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20066_low_1 (Length: 418)
Name: NF20066_low_1
Description: NF20066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20066_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 43589478 - 43589092
Alignment:
| Q |
18 |
ataatgtgtgatatgcactaagtcacgtcataattgactaacaataatttaacaaaagtatttcattagaaaataaaaatacatcgagggcctgattaca |
117 |
Q |
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| T |
43589478 |
ataatgtgtgatatgcactaagtcacgtcataattgactaacaataatttaacaaaagtatttcattagaaaataaaaatacatcaagggcctgattaca |
43589379 |
T |
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| Q |
118 |
atttttagtttaaggacctatttaataattcttaaatagaccagtgagctataaattaaaaaccatgatttaaagaatagaaagaattaggtattaagat |
217 |
Q |
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| T |
43589378 |
atttttagtttaaggacctatttaataattcttaaatagaccagtgagctataaattaaaaaccatgatttaaagaatagaaagaattaggtattaagat |
43589279 |
T |
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| Q |
218 |
tttaagcttaataattattaggcaaaatcatgtctccaattattttaagtttgaccattattttggattgcacttttaagttttttcttcttgaagttat |
317 |
Q |
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| T |
43589278 |
tttaagcttaataattattaggcaaaatcatgtctccaattattttaagtttgaccattattttggattgcacttttaagttttt---tcttgaagttat |
43589182 |
T |
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| Q |
318 |
gctctccttacacttttgttctaaatgaaatattttgggaggttgtgaaccacaacttttgtttcaaaccaagagataagcgacattcat |
407 |
Q |
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| T |
43589181 |
gttctccttacacttttgttctaaatgaaatattttgggagggtgtgaaccacaacttttgtttcaaaccaagagataagcgacattcat |
43589092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 12547952 - 12547915
Alignment:
| Q |
119 |
tttttagtttaaggacctatttaataattcttaaatag |
156 |
Q |
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| T |
12547952 |
tttttagtttaaggacctatttaaaaattctcaaatag |
12547915 |
T |
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