View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20067_high_3 (Length: 347)
Name: NF20067_high_3
Description: NF20067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20067_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 42717346 - 42717005
Alignment:
| Q |
6 |
agtgagatgaaaggatttgacctgcaggaatggaacagttatgattaatacagtggagataacataaaaggaaattttttaagagaaataatatatgagt |
105 |
Q |
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| T |
42717346 |
agtgaaatgaaaggatttgacctgcaggaatggaacagttatgattaatacagtggagataacatacaaggaaattttttaagagaaataatatatgagt |
42717247 |
T |
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| Q |
106 |
gtatctctttatttcactccacgcagcaatactttgaaaagtcgggggattaatctcaccatgggccttctttaggacataaagtagactaacgagcacc |
205 |
Q |
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| T |
42717246 |
gtatctctttatttcactccacgcagcaatactttgaaaagtcgggggattaatctcaccatgggccttctttaggacataaagtagactaacgagcacc |
42717147 |
T |
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| Q |
206 |
caatttgaaattgaacttcttccggaatatcaaacaccaatcaccacattgataaccgctgaatcaataaatctttgtcctcaggactaagctgataagc |
305 |
Q |
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| T |
42717146 |
caatttgaaattgaacttcttccggaataacaaacaccaatcaccacattgataaccgctgaatcaataaatctttgtcctcgggactaagctgataagc |
42717047 |
T |
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| Q |
306 |
atatcaagaactgggaaaaaattaaacagattgagcaccaag |
347 |
Q |
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| T |
42717046 |
atatcaagaactgggaaaaaattaaacagattgagcaccaag |
42717005 |
T |
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