View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20067_low_2 (Length: 433)

Name: NF20067_low_2
Description: NF20067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20067_low_2
NF20067_low_2
[»] chr1 (9 HSPs)
chr1 (18-424)||(32165163-32165569)
chr1 (41-283)||(32168977-32169214)
chr1 (43-238)||(27350134-27350329)
chr1 (43-239)||(27325104-27325300)
chr1 (130-240)||(27358142-27358252)
chr1 (42-212)||(32158076-32158246)
chr1 (338-374)||(27325372-27325408)
chr1 (338-374)||(27350428-27350464)
chr1 (338-374)||(32169280-32169316)
[»] chr4 (2 HSPs)
chr4 (123-239)||(44288205-44288321)
chr4 (33-86)||(44288361-44288414)
[»] chr5 (2 HSPs)
chr5 (42-213)||(29697561-29697731)
chr5 (51-80)||(29689527-29689556)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 32165163 - 32165569
Alignment:
Q  18 gtgtgattttatgaacataaattgtacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32165163 gtgtgattttatgaacataaattgtacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacat 32165262  T
Q  118 gtttcagagatgttgaattcagcagctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaatgctg 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32165263 gtttccgagatgttgaattcagcagctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaatgctg 32165362  T
Q  218 aatcggtgaatgcatcaacctgtgtatgtacatcatcatattactcagattcacacaacagctatgnnnnnnngtacagtaataataacaaatacagtta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  32165363 aatcggtgaatgcatcaacctgtgtatgtacatcatcatattactcagattcacacaacagctatgtttttttgtacagtaataataacaaatacagtta 32165462  T
Q  318 acagttaaataaataagcaaacataccacgtagtatttgacatgtttctttgccatttgatgatgagggaacaagtgttggagataaaactggtcaaagc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32165463 acagttaaataaataagcaaacataccacgtagtatttgacatgtttctttgccatttgatgatgagggaacaagtgttggagataaaactggtcaaagc 32165562  T
Q  418 ccctatg 424  Q
    |||||||    
T  32165563 ccctatg 32165569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 41 - 283
Target Start/End: Original strand, 32168977 - 32169214
Alignment:
Q  41 gtacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttcagagatgttgaattcagc 140  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  32168977 gtacctcagcaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttcagagatgttgaattcagc 32169076  T
Q  141 agctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaatgctgaatcggtgaatgcatcaacctgt 240  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||     
T  32169077 agctactaattgcaaccattcatcatctttatcttcttctagtaaacacactgctgctggattccctttgaatgctgaatctgtgaatgcatccacctga 32169176  T
Q  241 gtatgtacatcatcatattactcagattcacacaacagctatg 283  Q
    |||||||| |||||     ||||||||||||||||||||||||    
T  32169177 gtatgtacctcatc-----actcagattcacacaacagctatg 32169214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 27350134 - 27350329
Alignment:
Q  43 acctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttcagagatgttgaattcagcag 142  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||  |||||||||||||    
T  27350134 acctcaacaataggagtaaaccatttcagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcag 27350233  T
Q  143 ctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaatgctgaatcggtgaatgcatcaacct 238  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  || |||||||| |||||||    
T  27350234 ctaatgattgcaaccattcatcatctttatcttcttctaagaaacacactgctgctggattccctttgaatgctgtctccgtgaatgcgtcaacct 27350329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 27325104 - 27325300
Alignment:
Q  43 acctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttcagagatgttgaattcagcag 142  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||  |||||||||||||    
T  27325104 acctcaacagtaggagtaaaccatctgagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcag 27325203  T
Q  143 ctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaatgctgaatcggtgaatgcatcaacctg 239  Q
    ||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||  || ||||| ||||| |||||    
T  27325204 ctaatgcttgcaaccattcatcatctttatcttcttctaagaaacacactgctgctggattccctttgaatactgtctctgtgaaagcatccacctg 27325300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 27358252 - 27358142
Alignment:
Q  130 ttgaattcagcagctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaatgctgaatcggtgaatg 229  Q
    ||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  || |||||||    
T  27358252 ttgaactcagaagctaatgcttgcaaccattcatcatctttatcttcttctaataaacatactgctgctggattccctttgaatgctgtctcagtgaatg 27358153  T
Q  230 catcaacctgt 240  Q
    |||| ||||||    
T  27358152 catccacctgt 27358142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 32158076 - 32158246
Alignment:
Q  42 tacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttcagagatgttgaattcagca 141  Q
    |||||||||||  ||||||||||||||||||| |||||| ||| |||  ||||| |  | || | ||| ||| || ||  ||  ||||||||| |||||     
T  32158076 tacctcaacaatgggagtaaaccatctaagacgaaaacggggattagtagttcccttgacaggaatcaaatagcaggtaacattgatgttgaactcagct 32158175  T
Q  142 gctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaa 212  Q
    |||| |  |||||||||||||||||| || ||||  ||||| |||||||| ||||| || ||||| |||||    
T  32158176 gctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa 32158246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 27325372 - 27325408
Alignment:
Q  338 acataccacgtagtatttgacatgtttctttgccatt 374  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  27325372 acataccacgtagtacttgacaggtttctttgccatt 27325408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 27350428 - 27350464
Alignment:
Q  338 acataccacgtagtatttgacatgtttctttgccatt 374  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  27350428 acataccccgtagtacttgacatgtttctttgccatt 27350464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 32169280 - 32169316
Alignment:
Q  338 acataccacgtagtatttgacatgtttctttgccatt 374  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  32169280 acataccacgtagtatttcacaggtttctttgccatt 32169316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 44288321 - 44288205
Alignment:
Q  123 agagatgttgaattcagcagctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaatgctgaatcg 222  Q
    |||||| ||||| ||||| |||| || ||||||||||||||||||  | ||||||||||| |||||||| ||||| || || || ||||| ||||| ||     
T  44288321 agagatattgaactcagctgctaatgcttgcaaccattcatcatccctctcttcttctaacaaacacactgctgcagggtttcccttgaacgctgactca 44288222  T
Q  223 gtgaatgcatcaacctg 239  Q
    ||||| ||||| |||||    
T  44288221 gtgaaagcatccacctg 44288205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 44288414 - 44288361
Alignment:
Q  33 cataaattgtacctcaacaacaggagtaaaccatctaagaccaaaacgaggaat 86  Q
    |||||||||||||||||| | |||| ||||||||||||||  |||||| |||||    
T  44288414 cataaattgtacctcaactataggactaaaccatctaagatgaaaacggggaat 44288361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 29697731 - 29697561
Alignment:
Q  42 tacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatag---aagtcagataacatgtttcagagatgttgaattca 138  Q
    |||||||  |||| ||||||||||||| ||||||||||| ||| || ||| || ||||||||   |||| | |||||| |||||||| || |||||||||    
T  29697731 tacctcagtaacatgagtaaaccatctgagaccaaaacggggattaaaggctctatgaataggataagttaaataacaggtttcagatatattgaattca 29697632  T
Q  139 gcagctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaat 213  Q
    |||  || ||||||||||  |||||    | || ||| ||||||||||||||| || || || ||||||||||||    
T  29697631 gcacttaatgattgcaactgttcat----tgtaacttattctaataaacacactgcagcagggttccctttgaat 29697561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 29689556 - 29689527
Alignment:
Q  51 aacaggagtaaaccatctaagaccaaaacg 80  Q
    ||||||||||||||||||||||||||||||    
T  29689556 aacaggagtaaaccatctaagaccaaaacg 29689527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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