View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20068_high_1 (Length: 1001)
Name: NF20068_high_1
Description: NF20068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20068_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 18 - 607
Target Start/End: Original strand, 44687875 - 44688465
Alignment:
| Q |
18 |
ggcatggcatgggcccactaatccatccaataatgtcaaacgtgtctatgaggcagagctcgtaaggaatgatcaaaatgggcaaaggatttatacccgc |
117 |
Q |
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| T |
44687875 |
ggcatggcatgggcccactaatccatccaataatgtcaaacgtgtctatgaggcagagctcgaaaggaatgatcaaaatgggcaaaggatttatacccgc |
44687974 |
T |
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| Q |
118 |
aaaaactacaatacctaggataacctaggataagtgaagtaaatatcttaattttgcattaaaatttgaccaatacaagtgctggtacacttccaatttg |
217 |
Q |
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| T |
44687975 |
aaaaactacaatacctaggataacctaggataagtgaagtaaatatcttaattttgcattaaaatttgaccaatacaagtgctggtacacttccaatttg |
44688074 |
T |
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| Q |
218 |
aagtttgttttaaaatatctcgtttgttttatagtactaactaaaataaaagagtgagggtgtaacatgttgatatcatagtactaatactaattaacat |
317 |
Q |
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| T |
44688075 |
aagtttgttttaaaatatctcgtttgttttatagtactaactaaaataaaagagtgagggtgtaacatgttgatatcatagtactaatactaattaacat |
44688174 |
T |
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| Q |
318 |
aaaagagt-ggggtgtaacattcatattcaaaccgatctaaattaaaaatgtaaatcgctctaaaaaactaaagattgcaagttattaatgagtgattat |
416 |
Q |
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| T |
44688175 |
aaaagagtgggggtgtaacattgatattcaaaccgatctaaattaaaaatgtaaatcgctctaaaaaactaaagattgcaagttattaatgagtaattat |
44688274 |
T |
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| Q |
417 |
ttaaagaatcaatccgcattaagtctaacataaatgagtagtttaccatagtgtgattagcccatgattaagaatttagcaagggatctgaattcttaac |
516 |
Q |
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| T |
44688275 |
ttaaagaatcaattcgtattaagtctaacataaatgagtagtttaccatagtgtgattagtcaataattaagaatttagcaagagatttgaattctcgac |
44688374 |
T |
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| Q |
517 |
aggacaaaaaacacgcagttacatgtagcttttgaacttacatattaatataagttcgtatagttcatataatactaataataacaactca |
607 |
Q |
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| T |
44688375 |
aggacaaaaaacacgcagttacacgtagcttttgaacttacatattaatataagttcgtatagttcatataatactaataataacaactca |
44688465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 660 - 984
Target Start/End: Original strand, 44688479 - 44688803
Alignment:
| Q |
660 |
ctacctttaagacgtgtgagtccaactactaacnnnnnnnnttaaaatagtcgtatcaaccattaagttaagattagatggttgggattgaaaactacat |
759 |
Q |
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| T |
44688479 |
ctacttttaagatgtgtgaatccaactactaacaaaaaaaattaaaatagtcgtaccaaccattaagttaagattagatggttgggattgaaaactacat |
44688578 |
T |
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| Q |
760 |
gacttaaattatgcaccaaatccaaatagagtgggaggaggtatccattaattctctcatatgtcttaatcatgaaatttgtattttcatgatctaatgc |
859 |
Q |
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| T |
44688579 |
gacttaaattatgcaccaaatccaaatagagtgggaggaggtatccattaattctctcatatgtcttaatcatgaaatttgtattttcatgatctaatgc |
44688678 |
T |
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| Q |
860 |
cgccatatatacaccacttcatgaataaaaattagtcacgtatctttttctatcgttctcatttcttaatgtctcaacaaaggtagtttctcttctcttc |
959 |
Q |
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| T |
44688679 |
cgccatatatacaccacttcatgaataaaaattagtcacgtatctttttctatcgttctcatttcttaatgtctcaacaaaggtagtttctcttctcttc |
44688778 |
T |
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| Q |
960 |
tttcattcattctccctctctatat |
984 |
Q |
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| T |
44688779 |
tttcattcattctccctatctatat |
44688803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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