View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20068_high_4 (Length: 400)

Name: NF20068_high_4
Description: NF20068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20068_high_4
NF20068_high_4
[»] chr4 (2 HSPs)
chr4 (34-390)||(166870-167225)
chr4 (205-333)||(106800-106928)
[»] scaffold0013 (1 HSPs)
scaffold0013 (209-333)||(88553-88677)
[»] chr7 (1 HSPs)
chr7 (205-332)||(13055224-13055351)
[»] chr3 (1 HSPs)
chr3 (243-324)||(12134943-12135024)
[»] chr8 (10 HSPs)
chr8 (226-338)||(5656649-5656761)
chr8 (229-323)||(5718267-5718361)
chr8 (229-323)||(5686120-5686214)
chr8 (220-323)||(5638186-5638289)
chr8 (220-323)||(5651384-5651487)
chr8 (220-322)||(5602654-5602756)
chr8 (220-322)||(5602916-5603018)
chr8 (220-322)||(5632352-5632454)
chr8 (220-300)||(5602090-5602170)
chr8 (220-300)||(5638450-5638530)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 34 - 390
Target Start/End: Complemental strand, 167225 - 166870
Alignment:
Q  34 atgtatatatcccaacgccaaaattggccaacttatttcnnnnnnnnnncttccggttatttgaactcattccttttggaaatgaaaacgtgcaagaaca 133  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  167225 atgtatatatcccaacgccaaaattggccaacttatttctttcttttttcttccggttatttgaactcattccttttggaaatgaaaacgtgcaagaaca 167126  T
Q  134 catccagcataagaaaaattaacttatcaacttgattggttttatttgcctgattctttaaagggtagtcacagtggaaggcaatggaacctgtctacga 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  167125 catccagcataagaaaaattaacttatcaacttgattggttttatttgcctgatt-tttaaagtgtagtcacagtggaaggcaatggaacctgtctacga 167027  T
Q  234 tactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgcaataaataaa 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  167026 tactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgagatatcctgcaataaataaa 166927  T
Q  334 taagaggcaaaggttttatgttgatgttgactgactataagagccatattatttcat 390  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  166926 taagaggcaaaggttttatgttgatgctgactgactataagagccatattatttcat 166870  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 106928 - 106800
Alignment:
Q  205 cagtggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 304  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  106928 cagtggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 106829  T
Q  305 tgctcctgtgatttcctgcaataaataaa 333  Q
    | ||||||||||||||||| |||||||||    
T  106828 tactcctgtgatttcctgccataaataaa 106800  T

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Target: scaffold0013 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 209 - 333
Target Start/End: Original strand, 88553 - 88677
Alignment:
Q  209 ggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgct 308  Q
    |||||||||||||||| ||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  88553 ggaaggcaatggaacccgtctacgatactcagccagagcccacaatggaaaaatatttctatacattgggtaatgcaacatacaatttttcatgaatact 88652  T
Q  309 cctgtgatttcctgcaataaataaa 333  Q
    ||||||| ||||||| |||||||||    
T  88653 cctgtgagttcctgcgataaataaa 88677  T

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Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 205 - 332
Target Start/End: Complemental strand, 13055351 - 13055224
Alignment:
Q  205 cagtggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 304  Q
    ||||||||| ||||||||| | |||||||||||| | || ||||||||||||||||||||||||||||||||  |||||||||||||||||||| | |||    
T  13055351 cagtggaagacaatggaacatatctacgatactcagctaaagcccacaatgggaaaatatctctatacattgtataatgcaacatacaatttttgaagaa 13055252  T
Q  305 tgctcctgtgatttcctgcaataaataa 332  Q
    | ||||||||||| ||| ||||||||||    
T  13055251 tactcctgtgattccctacaataaataa 13055224  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 12134943 - 12135024
Alignment:
Q  243 agagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgca 324  Q
    |||||||| | ||| ||||||| |||||||||||| |||||||||||||||||||||| || || |||||||||||||||||    
T  12134943 agagcccatagtggaaaaatatttctatacattggataatgcaacatacaatttttcacgattgatcctgtgatttcctgca 12135024  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 5656649 - 5656761
Alignment:
Q  226 gtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgcaa 325  Q
    |||||||||| || | ||||||||||| ||| || |||||||||||||| | |||||||| ||| || |||||||||||| |||| |||| ||||||| |    
T  5656649 gtctacgatattcagctagagcccacattggaaatatatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgcca 5656748  T
Q  326 taaataaataaga 338  Q
     | ||||||||||    
T  5656749 aacataaataaga 5656761  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 5718267 - 5718361
Alignment:
Q  229 tacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgc 323  Q
    ||||||| || | ||||||||||| |||||| ||||||||| |||||| |||||||| ||| || |||||||||||| || |||||| |||||||    
T  5718267 tacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgc 5718361  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 5686120 - 5686214
Alignment:
Q  229 tacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgc 323  Q
    ||||||| || | ||||||||||| |||||| ||||||||| |||| | |||||||| ||| || |||||||||||| || |||||| |||||||    
T  5686120 tacgatattcagctagagcccacattgggaatatatctctaaacatggcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgc 5686214  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 5638186 - 5638289
Alignment:
Q  220 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 319  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5638186 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5638285  T
Q  320 ctgc 323  Q
    ||||    
T  5638286 ctgc 5638289  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 5651384 - 5651487
Alignment:
Q  220 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 319  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5651384 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5651483  T
Q  320 ctgc 323  Q
    ||||    
T  5651484 ctgc 5651487  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 5602756 - 5602654
Alignment:
Q  220 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 319  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5602756 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5602657  T
Q  320 ctg 322  Q
    |||    
T  5602656 ctg 5602654  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 5603018 - 5602916
Alignment:
Q  220 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 319  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5603018 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5602919  T
Q  320 ctg 322  Q
    |||    
T  5602918 ctg 5602916  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 5632352 - 5632454
Alignment:
Q  220 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 319  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5632352 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5632451  T
Q  320 ctg 322  Q
    |||    
T  5632452 ctg 5632454  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 5602170 - 5602090
Alignment:
Q  220 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttca 300  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| ||||||    
T  5602170 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5602090  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 5638450 - 5638530
Alignment:
Q  220 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttca 300  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| ||||||    
T  5638450 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5638530  T

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