View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20068_high_5 (Length: 389)

Name: NF20068_high_5
Description: NF20068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20068_high_5
NF20068_high_5
[»] chr4 (4 HSPs)
chr4 (24-284)||(31737190-31737450)
chr4 (89-192)||(13852294-13852397)
chr4 (350-382)||(31737092-31737124)
chr4 (23-66)||(55351268-55351311)
[»] chr6 (2 HSPs)
chr6 (68-276)||(8247039-8247247)
chr6 (129-165)||(14457238-14457274)
[»] chr7 (1 HSPs)
chr7 (61-207)||(12829238-12829388)
[»] chr1 (3 HSPs)
chr1 (65-212)||(40197872-40198019)
chr1 (128-244)||(40387947-40388063)
chr1 (24-66)||(40388157-40388199)
[»] chr5 (2 HSPs)
chr5 (62-228)||(29299614-29299780)
chr5 (25-62)||(10428279-10428316)
[»] scaffold0263 (1 HSPs)
scaffold0263 (24-66)||(8633-8675)
[»] chr8 (2 HSPs)
chr8 (68-210)||(4901708-4901850)
chr8 (61-243)||(25659795-25659977)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 24 - 284
Target Start/End: Complemental strand, 31737450 - 31737190
Alignment:
Q  24 agatagtgacggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737450 agatagtgacggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaa 31737351  T
Q  124 agggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31737350 agggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgattggttgtttatacaaa 31737251  T
Q  224 ttacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737250 ttacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta 31737190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 13852294 - 13852397
Alignment:
Q  89 tttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggatt 188  Q
    ||||||||||| ||||||||||||||  |||||||    ||||| || |||||||||||||| ||||||||||| || || ||  |||  ||||||||||    
T  13852294 tttgatcaatttcatgctaatgaggtgctaccaaagtccatgttggcgtattttgttgctttaattccaaaagtgtcttcacctttggagttgaaggatt 13852393  T
Q  189 atcg 192  Q
    ||||    
T  13852394 atcg 13852397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 31737124 - 31737092
Alignment:
Q  350 tactgtatgggtgcgctactgctgtctgtgctg 382  Q
    |||||||||||||||||||||||||||||||||    
T  31737124 tactgtatgggtgcgctactgctgtctgtgctg 31737092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 55351268 - 55351311
Alignment:
Q  23 aagatagtgacggtaataaaagtccgggtccggatggttttaat 66  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||    
T  55351268 aagatagtgatggtaataaaagcccgggtccggatggatttaat 55351311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 276
Target Start/End: Complemental strand, 8247247 - 8247039
Alignment:
Q  68 aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat 167  Q
    ||||||||||||| |||||| || |||||||| |||||||||||| | ||| ||||||| ||||| |  ||||||||||| |||||  | ||||||||||    
T  8247247 aaggatgaggtgatgattttgttcgatcaatttcatgctaatgagattatatcaaaaggaatgttggtgtattttgttgcattgatatcgaaagtttcat 8247148  T
Q  168 ctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaa 267  Q
    |||| |||||| |||||||||| ||  |||| || ||||| ||| |||||||||||||||| ||||| ||| || ||||||||||||| ||  | |||||    
T  8247147 ctccaatggctatgaaggattaccgctctatttcattgctaggtagtttatacaaattactcgccaaagttttaacaaggcgtttggcgggaattatgaa 8247048  T
Q  268 ttcgattat 276  Q
    ||| |||||    
T  8247047 ttctattat 8247039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 14457238 - 14457274
Alignment:
Q  129 tgttagcttattttgttgctttgattccaaaagtttc 165  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  14457238 tgttggcttattttgtggctttgattccaaaagtttc 14457274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 12829388 - 12829238
Alignment:
Q  61 tttaatcaaggatgaggtgaggattttat----ttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattcc 156  Q
    ||||||||||||||||||| ||||| |||    |||||||||| ||||  ||||||| ||| ||||||||  ||||||| ||||||||||||||||||||    
T  12829388 tttaatcaaggatgaggtgcggattatatatgtttgatcaatttcatgggaatgaggaaatcccaaaaggtttgttagcgtattttgttgctttgattcc 12829289  T
Q  157 aaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgct 207  Q
      ||||||||||||| | ||||||||||||||| |  ||||| ||||||||    
T  12829288 ggaagtttcatctcctagggctttgaaggattaccaccctatttctttgct 12829238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 212
Target Start/End: Complemental strand, 40198019 - 40197872
Alignment:
Q  65 atcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagttt 164  Q
    ||||| ||||||||||| ||| | ||||| ||||| |||| |||||||||| | || |  |||||||| |||||||||||||| || ||||| |||||||    
T  40198019 atcaaagatgaggtgagaattatgtttgaccaatttcatggtaatgaggtatttccgagggggatgttggcttattttgttgcgttaattcctaaagttt 40197920  T
Q  165 catctccgatggctttgaaggattatcgtcctatatctttgcttggtt 212  Q
      || || |||||||||| ||||| ||  || || |||||||||||||    
T  40197919 tgtcccctatggctttgagggattttcaaccgatttctttgcttggtt 40197872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 40388063 - 40387947
Alignment:
Q  128 atgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattac 227  Q
    ||||| |||| ||||||  |||||||||| ||||| |||||| |||||| ||||||||||| | | || ||||  ||||| || || ||||| |||||||    
T  40388063 atgttggctttttttgtgactttgattcccaaagtgtcatcttcgatggatttgaaggattttaggccaatattcttgctaggatgcttatataaattac 40387964  T
Q  228 ttgccaaggttctagca 244  Q
    | ||||||||| |||||    
T  40387963 tagccaaggttttagca 40387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 40388199 - 40388157
Alignment:
Q  24 agatagtgacggtaataaaagtccgggtccggatggttttaat 66  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  40388199 agatagtgatggtaataaaagtccgtgtccggatggttttaat 40388157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 29299614 - 29299780
Alignment:
Q  62 ttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaag 161  Q
    ||||| |||||||||||||||||| | ||||||||||| ||||||||||||||  | |||| | |  | |||||||||||||| |||||||| ||||| |    
T  29299614 ttaatgaaggatgaggtgaggattatgtttgatcaattacatgctaatgaggtggtgccaagaagtttattagcttattttgtcgctttgatcccaaagg 29299713  T
Q  162 tttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattact 228  Q
    | || || ||||||   |||||||| | |||||| || ||| | |||||| || | ||||| |||||    
T  29299714 tgtcctcaccgatgatgttgaaggactttcgtccaatttctctacttggtagtatttacaagttact 29299780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 10428279 - 10428316
Alignment:
Q  25 gatagtgacggtaataaaagtccgggtccggatggttt 62  Q
    |||||||||||  |||||||||||||||||||||||||    
T  10428279 gatagtgacggcgataaaagtccgggtccggatggttt 10428316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 8675 - 8633
Alignment:
Q  24 agatagtgacggtaataaaagtccgggtccggatggttttaat 66  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  8675 agatagtgatggtaataaaagtccgggtccggatggttttaat 8633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 4901708 - 4901850
Alignment:
Q  68 aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat 167  Q
    |||||||| || || ||| | ||||||||||| || |||||||||||  |||| ||  | ||||||||||| ||||| ||||| ||||||||  |||| |    
T  4901708 aaggatgaagttagaattatgtttgatcaatttcacgctaatgaggttttaccgaagagtatgttagcttactttgtagctttaattccaaagatttctt 4901807  T
Q  168 ctccgatggctttgaaggattatcgtcctatatctttgcttgg 210  Q
    | ||  ||||||| ||||||| |||||| || |||||||||||    
T  4901808 cccctttggcttttaaggattttcgtcccatttctttgcttgg 4901850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 243
Target Start/End: Original strand, 25659795 - 25659977
Alignment:
Q  61 tttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaa 160  Q
    |||||| || ||||| ||||| ||||| ||||| ||||| ||||||||||||||  | || | ||| ||||| |||||||||||  |||| ||| | |||    
T  25659795 tttaattaaagatgaagtgagaattttgtttgaccaatttcatgctaatgaggtgttgccgagaggtatgttggcttattttgtgactttaattactaaa 25659894  T
Q  161 gtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagc 243  Q
    || || || ||  |||  |||||||||||| | || || || |||||||| ||| | || ||| ||||||| ||||| |||||    
T  25659895 gtctcgtcccctttggagttgaaggattatagaccgatttccttgcttggatgtctctataaaatacttgcaaaggtcctagc 25659977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University