View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20068_high_7 (Length: 301)
Name: NF20068_high_7
Description: NF20068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20068_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 42163130 - 42163386
Alignment:
| Q |
20 |
tactactactattgaagaaatgaaactgctggtcataaattaacctagtattcaaaatcgacaaagactttaacaataacaatagggacaaaacattatt |
119 |
Q |
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| T |
42163130 |
tactactactattgaagaaatgaaactgctggtcataaattaacctagcattcaaaatcgacaaagactttaacaa-----------------cattatt |
42163212 |
T |
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| Q |
120 |
ccagtaacacaagttggcaattcaacaaatagtgaagcatctgatttacacaaacgaatcctgccgacttcg--tcaaatcctataaacaaattcatgta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
42163213 |
ccagtaacacaagttggcaattcaacaaatagtgaagcatctgatttacacaaacgaatcctgccgacttcaaatcaaatcctataaataaattcatgta |
42163312 |
T |
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| Q |
218 |
cagtgatatagaaacactaaaaagtaaaaccatattgtaaacgatttttgttgtcaagttagattgttcctttg |
291 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42163313 |
cagtgatatagaagcactaaaaagtaaaaccatattgtaaacgatttttgttgtcaagttagattgttcctttg |
42163386 |
T |
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