View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20068_low_2 (Length: 661)
Name: NF20068_low_2
Description: NF20068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20068_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 244 - 552
Target Start/End: Original strand, 45519200 - 45519507
Alignment:
| Q |
244 |
ttttggacttgaccatgtgttcatccattgatgggttttgaagaatgaagtttttatgatcacaagttaacatggaaagtgaagttttgttttcaacatt |
343 |
Q |
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| T |
45519200 |
ttttggacttgaccatgtgttcatccattgatgggttttgaagaatgaagtttttatgatcacaagttaacatggaaagtgaagttttgttttcaacatt |
45519299 |
T |
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| Q |
344 |
ttctcaataaaatgtgaagtgtaatggtgtaataaagtttcttccatggaaagatcaggttaatagaannnnnnnnnaaaaggagctagcatagagtcaa |
443 |
Q |
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| T |
45519300 |
ttctcaataaaatgtgaagtgtaatggtgtaataaagtttcttccatggaaagatcaagttaatagaa-ttttttttaaaaggagctagcatagagtcaa |
45519398 |
T |
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| Q |
444 |
ttgaataattgcattcaagtttgaccttgaagcagttagatgttagctggaatttgcaaaatggatttgtttaaaattgcctactaattcaagaacaaga |
543 |
Q |
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| T |
45519399 |
ttgaataattgcattcaagtttgaccttgaagcagttagatgttagctggaatttgcaaaatggatttgtttaaaattgcctactaattcaagaacaaga |
45519498 |
T |
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| Q |
544 |
aagtaggca |
552 |
Q |
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| T |
45519499 |
aagtaggca |
45519507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 45518965 - 45519106
Alignment:
| Q |
9 |
ccaagaatatcattgatgaatctcaatcccatcacttcaagtgcttcattttctgccacgtgtctgcatttttcagcttcatgcaaacccttggacccgg |
108 |
Q |
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| T |
45518965 |
ccaacaatatcattgatgaatttcaatcccatcacttcaagtgcttcattttctgccacgtgtccgcatttttcagcttcatgcaaacccttggacccgg |
45519064 |
T |
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| Q |
109 |
tttgaaccggataaaatgaatcaatgtcattttcaacggtgc |
150 |
Q |
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| T |
45519065 |
tttgaaccggataaaatgaatcaatgtcattttcaacggtgc |
45519106 |
T |
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