View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20068_low_4 (Length: 580)

Name: NF20068_low_4
Description: NF20068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20068_low_4
NF20068_low_4
[»] chr1 (16 HSPs)
chr1 (75-574)||(29099587-29100079)
chr1 (75-192)||(15495931-15496048)
chr1 (311-426)||(19258742-19258857)
chr1 (309-428)||(2509028-2509147)
chr1 (309-428)||(34307206-34307325)
chr1 (309-428)||(39249931-39250050)
chr1 (309-428)||(46901803-46901922)
chr1 (92-184)||(26842000-26842092)
chr1 (344-426)||(28647392-28647474)
chr1 (84-192)||(14351048-14351155)
chr1 (136-195)||(10494882-10494941)
chr1 (120-191)||(26236753-26236824)
chr1 (310-388)||(10146971-10147049)
chr1 (152-192)||(2077379-2077419)
chr1 (362-426)||(8848923-8848987)
chr1 (353-428)||(9642933-9643009)
[»] chr7 (24 HSPs)
chr7 (311-428)||(23980137-23980254)
chr7 (311-428)||(5811231-5811348)
chr7 (309-428)||(7699951-7700070)
chr7 (309-428)||(7700149-7700268)
chr7 (309-428)||(7700347-7700466)
chr7 (309-428)||(7700545-7700664)
chr7 (309-428)||(42221031-42221150)
chr7 (311-428)||(13108154-13108270)
chr7 (311-428)||(31148296-31148413)
chr7 (309-428)||(28307563-28307682)
chr7 (309-428)||(36346633-36346751)
chr7 (81-196)||(21590510-21590625)
chr7 (309-428)||(21807390-21807509)
chr7 (309-428)||(26972271-26972390)
chr7 (309-428)||(34108430-34108549)
chr7 (309-431)||(30887704-30887826)
chr7 (343-428)||(20086696-20086781)
chr7 (356-428)||(46475075-46475147)
chr7 (309-428)||(45782728-45782847)
chr7 (353-428)||(34828113-34828188)
chr7 (310-428)||(38321014-38321132)
chr7 (311-428)||(15020288-15020402)
chr7 (353-396)||(42950113-42950156)
chr7 (75-142)||(31039062-31039129)
[»] chr6 (8 HSPs)
chr6 (311-428)||(14022940-14023057)
chr6 (311-428)||(24208450-24208567)
chr6 (309-428)||(3986973-3987092)
chr6 (309-428)||(13697573-13697691)
chr6 (309-428)||(3118115-3118234)
chr6 (309-428)||(15345727-15345844)
chr6 (75-140)||(32747641-32747706)
chr6 (114-182)||(21881411-21881479)
[»] chr2 (21 HSPs)
chr2 (76-194)||(6705564-6705682)
chr2 (311-424)||(37914308-37914421)
chr2 (309-424)||(36315565-36315680)
chr2 (309-428)||(44958117-44958236)
chr2 (309-428)||(33732573-33732692)
chr2 (309-428)||(37498931-37499052)
chr2 (75-195)||(40900247-40900367)
chr2 (310-428)||(3830965-3831081)
chr2 (309-428)||(14572999-14573118)
chr2 (353-428)||(24137160-24137235)
chr2 (311-428)||(6376306-6376418)
chr2 (309-428)||(16089826-16089944)
chr2 (84-195)||(38531278-38531389)
chr2 (360-428)||(41188824-41188892)
chr2 (114-190)||(3921536-3921612)
chr2 (75-142)||(28164837-28164904)
chr2 (114-191)||(17282046-17282123)
chr2 (114-187)||(34660230-34660303)
chr2 (111-191)||(1895351-1895431)
chr2 (75-147)||(14950753-14950825)
chr2 (114-192)||(1551698-1551776)
[»] chr8 (16 HSPs)
chr8 (309-428)||(30432343-30432462)
chr8 (309-428)||(12665348-12665468)
chr8 (309-428)||(42162602-42162721)
chr8 (309-428)||(44081784-44081903)
chr8 (311-428)||(33726017-33726135)
chr8 (309-426)||(36189220-36189337)
chr8 (353-428)||(31318853-31318928)
chr8 (309-428)||(10203668-10203787)
chr8 (92-192)||(15050070-15050170)
chr8 (309-428)||(18184557-18184676)
chr8 (309-428)||(43186031-43186150)
chr8 (353-428)||(38845091-38845165)
chr8 (321-396)||(31547-31622)
chr8 (75-142)||(25142964-25143031)
chr8 (114-192)||(6443980-6444057)
chr8 (326-428)||(42668850-42668951)
[»] chr5 (25 HSPs)
chr5 (309-428)||(1815684-1815803)
chr5 (309-428)||(40888010-40888129)
chr5 (309-428)||(9408107-9408226)
chr5 (309-428)||(39370931-39371050)
chr5 (311-428)||(2237282-2237399)
chr5 (340-428)||(17225352-17225440)
chr5 (83-191)||(40680936-40681044)
chr5 (309-426)||(4300613-4300730)
chr5 (320-426)||(14831559-14831665)
chr5 (311-428)||(13347134-13347251)
chr5 (309-401)||(33404531-33404623)
chr5 (314-428)||(41003918-41004031)
chr5 (309-428)||(27553441-27553560)
chr5 (343-428)||(31800596-31800681)
chr5 (309-393)||(12164255-12164339)
chr5 (311-394)||(19596169-19596252)
chr5 (81-192)||(26331090-26331201)
chr5 (75-142)||(12156417-12156484)
chr5 (135-192)||(40599887-40599944)
chr5 (124-187)||(7271788-7271851)
chr5 (309-428)||(19124540-19124657)
chr5 (114-183)||(26656721-26656790)
chr5 (114-183)||(26928308-26928377)
chr5 (75-132)||(34574162-34574219)
chr5 (114-183)||(41355620-41355689)
[»] chr4 (22 HSPs)
chr4 (309-424)||(45829329-45829444)
chr4 (309-424)||(46192363-46192478)
chr4 (309-428)||(44275710-44275829)
chr4 (309-428)||(3672278-3672397)
chr4 (309-428)||(6112634-6112753)
chr4 (309-428)||(7217769-7217888)
chr4 (309-428)||(28093164-28093283)
chr4 (309-428)||(49243819-49243938)
chr4 (309-428)||(21391023-21391142)
chr4 (81-191)||(45873170-45873280)
chr4 (309-428)||(35544916-35545035)
chr4 (353-428)||(51038811-51038887)
chr4 (75-192)||(55728754-55728871)
chr4 (84-190)||(38093286-38093393)
chr4 (81-142)||(42677627-42677688)
chr4 (114-187)||(23054338-23054411)
chr4 (114-191)||(47518552-47518629)
chr4 (309-349)||(43245522-43245562)
chr4 (310-426)||(54849793-54849909)
chr4 (92-147)||(24957747-24957802)
chr4 (75-132)||(12130576-12130633)
chr4 (114-146)||(53202209-53202241)
[»] chr3 (20 HSPs)
chr3 (309-428)||(46112012-46112131)
chr3 (309-428)||(21559565-21559684)
chr3 (309-428)||(36749410-36749529)
chr3 (311-428)||(39467169-39467286)
chr3 (309-428)||(34749966-34750085)
chr3 (309-428)||(36370406-36370525)
chr3 (309-428)||(43999993-44000112)
chr3 (311-419)||(39072350-39072458)
chr3 (309-428)||(22894684-22894803)
chr3 (309-428)||(51339851-51339968)
chr3 (309-428)||(30735564-30735682)
chr3 (309-401)||(29460664-29460756)
chr3 (309-401)||(29471516-29471608)
chr3 (309-393)||(38231297-38231381)
chr3 (255-308)||(37067076-37067129)
chr3 (313-428)||(20856221-20856334)
chr3 (335-425)||(53638165-53638255)
chr3 (136-194)||(31699315-31699373)
chr3 (312-405)||(29820390-29820483)
chr3 (135-191)||(18269807-18269863)
[»] scaffold0062 (1 HSPs)
scaffold0062 (309-431)||(6722-6844)
[»] scaffold0092 (1 HSPs)
scaffold0092 (119-195)||(23272-23348)
[»] scaffold0043 (1 HSPs)
scaffold0043 (309-401)||(87259-87350)
[»] scaffold0044 (1 HSPs)
scaffold0044 (84-170)||(42826-42912)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 75 - 574
Target Start/End: Original strand, 29099587 - 29100079
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcac 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  29099587 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcaccaccacagaagacccagtatcagcac 29099686  T
Q  175 caccatgaaaaccaccacaaaagacccagtgtcagaaaataactcttgaggagagttacgttataactccaagctggcggaccccaaccataattcttgc 274  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29099687 caccatggaaaccaccacaaaagacccagtgtcagaaaataactcttgaggagagttacgttataactccaagctggcggaccccaaccataattcttgc 29099786  T
Q  275 aaagtaacccatgttttgtagctcgagctggcggtcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtgg 374  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||  |||||||||||||||||||||     
T  29099787 aaagtaactcatgttttgtagctcgagctggcggtcttatacataaaccaccttagatggcatacactc-tttacgtccacacacatttgtgacatgtga 29099885  T
Q  375 caaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattacttaacaaagannnnnnnnnaggaaactcaaccaagatctatatctat 474  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||            |||||||| ||| |||||||||||||      
T  29099886 caaaaacattgaaaaaagaaattaaaaggggtgatgatgtgatgtgaaattacttaataattttttttttttaggaaacttaacaaagatctatatct-- 29099983  T
Q  475 atcaatacgtttatctgttgacatagtggaaacacgtgttttgtgaaaattttagtactatatctatatctatacgtttatctgttgacatattgttcga 574  Q
        ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  29099984 ----atacgtttatctgttaacatagtggaaacacgtgttttgtgaaaattttagtactatatctatatctatacgtttatctgttgacattttgatcga 29100079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 15495931 - 15496048
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcac 174  Q
    ||||| |||||||||||||||||||| |||||||| || |||| |||||||||||||| |||||||||||||| || |||| |||||| |||||||||||    
T  15495931 gccaccacgagcatcaccaccaaaaaacaacatcagccaccacgagcatcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcac 15496030  T
Q  175 caccatgaaaaccaccac 192  Q
    ||||||||||||||||||    
T  15496031 caccatgaaaaccaccac 15496048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 311 - 426
Target Start/End: Complemental strand, 19258857 - 19258742
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    ||||||||||||||||| || || |||||||  |||||| | |||| | ||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  19258857 ttatacataaaccatctaaggtggcatacacctttttacacccacatatatttgtgacatgtggcaaaaacattgaaaaaagagatgaaaaggggtggtg 19258758  T
Q  411 atgtgatgtgaaatta 426  Q
    ||||||||||||||||    
T  19258757 atgtgatgtgaaatta 19258742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 2509028 - 2509147
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| |||||||||  ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||     
T  2509028 tcttatacatgaaccaccttaggtgacatacatccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgg 2509127  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  2509128 tgatatgatgtaaaattact 2509147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 34307325 - 34307206
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| ||||| || ||||||| |||||||   ||||||||||||||||| |||||||||||||||||| |||| || |||| ||||||    
T  34307325 tcttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagatatgaaaaagggtga 34307226  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  34307225 tgatatgatgtaaaattact 34307206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 39250050 - 39249931
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | || |||||||||||||| |||||||||||||||||| ||||||| |||| || ||     
T  39250050 tcttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgg 39249951  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| | |||| ||||||||    
T  39249950 tgatataatgtaaaattact 39249931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 46901922 - 46901803
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| ||||||||||  |||||| |  ||||| |||||||||| |||||||||||||| ||| ||||||| |||| ||||||    
T  46901922 tcttatacatgaaccaccttaggtgacatacaccattttacaccaacacatatttgtgacacgtggcaaaaacattaaaagaagagatgaaaaagggtga 46901823  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  46901822 tgatatgatgtaaaattact 46901803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 26842092 - 26842000
Alignment:
Q  92 caccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaa 184  Q
    ||||||||||||||| || || |||| ||||||| |||||| || ||||||||||| || |||| |||||||||||||| |||||||||||||    
T  26842092 caccaaaaaccaacaccagccaccacgagcatcaacaccaaaaatcaccacgagcaccaccacaaaagacccagtatcaacaccaccatgaaa 26842000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 28647392 - 28647474
Alignment:
Q  344 ttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatta 426  Q
    |||||| | |||||| |||||||| || ||||||||||||||||| || |||| |||||||||| ||||||||||||||||||    
T  28647392 ttttacacccacacatatttgtgatatttggcaaaaacattgaaagaatagatgaaaaggggtggtgatgtgatgtgaaatta 28647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 14351155 - 14351048
Alignment:
Q  84 agcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 183  Q
    |||||||||||||||||| |||| || || |||| ||||||||||  || |||||||||||| | || |||| || | ||| ||||| ||||| ||||||    
T  14351155 agcatcaccaccaaaaactaacaccagccaccacgagcatcaccataaaaaaccaccacgagaaccaccacaaaaaatccaatatcaacacca-catgaa 14351057  T
Q  184 aaccaccac 192  Q
    |||||||||    
T  14351056 aaccaccac 14351048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 10494882 - 10494941
Alignment:
Q  136 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 195  Q
    |||||||||||| || |||| |||||||| ||||| ||||||||||||||||| ||||||    
T  10494882 ccaccacgagcaccaacacaaaagacccaatatcaacaccaccatgaaaaccatcacaaa 10494941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 26236824 - 26236753
Alignment:
Q  120 gcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 191  Q
    |||||||||| || |||||||||||||| || |||| ||||| ||  |||||||||| ||||||||||||||    
T  26236824 gcatcaccactaaaaaccaccacgagcaccaccacaaaagactcaaaatcagcaccatcatgaaaaccacca 26236753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 388
Target Start/End: Original strand, 10146971 - 10147049
Alignment:
Q  310 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaa 388  Q
    |||||||||  |||| ||||| || ||||||| |||| || | |||||||| ||||||||||||||||||||| |||||    
T  10146971 cttatacatggaccaccttaggtggcatacaccctttgacccccacacacaattgtgacatgtggcaaaaacagtgaaa 10147049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 2077419 - 2077379
Alignment:
Q  152 cacagaagacccagtatcagcaccaccatgaaaaccaccac 192  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  2077419 cacaaaagacccagtatcaacaccaccatggaaaccaccac 2077379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 8848987 - 8848923
Alignment:
Q  362 ttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatta 426  Q
    |||||||||||| |||||||||||||| |||||||   | |||||||   |||||||||||||||    
T  8848987 ttgtgacatgtgacaaaaacattgaaataagagatgggagggggtgagagtgtgatgtgaaatta 8848923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 428
Target Start/End: Complemental strand, 9643009 - 9642933
Alignment:
Q  353 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaagggg-tgatgatgtgatgtgaaattact 428  Q
    |||||| | ||||||||  || |||||||| ||||| ||||||| | |||||| ||||||| |||||||||||||||    
T  9643009 cacacataattgtgacacatgacaaaaacaatgaaagaagagatgagaagggggtgatgatatgatgtgaaattact 9642933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 23980137 - 23980254
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  23980137 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgagg 23980236  T
Q  411 atgtgatgtgaaattact 428  Q
    ||||||||||||||||||    
T  23980237 atgtgatgtgaaattact 23980254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 311 - 428
Target Start/End: Complemental strand, 5811348 - 5811231
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||||||||| | ||| || ||||||  ||||| | | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  5811348 ttatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgagg 5811249  T
Q  411 atgtgatgtgaaattact 428  Q
    ||||||||||||||||||    
T  5811248 atgtgatgtgaaattact 5811231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 7700070 - 7699951
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700070 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7699971  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||| | ||||||||    
T  7699970 tgatatgatataaaattact 7699951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 7700268 - 7700149
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700268 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700169  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||| | ||||||||    
T  7700168 tgatatgatataaaattact 7700149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 7700466 - 7700347
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700466 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700367  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||| | ||||||||    
T  7700366 tgatatgatataaaattact 7700347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 7700664 - 7700545
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700664 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700565  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||| | ||||||||    
T  7700564 tgatatgatataaaattact 7700545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 42221150 - 42221031
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || |||||||| |||||| | ||||||||||||||||| |||||||||||||||||| |||| || |||||||||||    
T  42221150 tcttatacatgaaccaccttaggtggcatacacttttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagatataaaaaggggtga 42221051  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  42221050 tgatatgatgttaaattact 42221031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 13108154 - 13108270
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||||||||| |||||  | ||||||| ||||||| | ||||||||||||||||||||||||||||| |||||| |||||| | |||||||||| |    
T  13108154 ttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacgttgaaagaagaga-tgaaaggggtgagg 13108252  T
Q  411 atgtgatgtgaaattact 428  Q
    ||||||||||||||||||    
T  13108253 atgtgatgtgaaattact 13108270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 31148296 - 31148413
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||| ||||||||||| || ||||||| ||||||| | |||||||||||||||||  ||||||||||||||||| ||||||| |||| ||||||||    
T  31148296 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacatggcaaaaacattgaaagaagagatgaaaatgggtgatg 31148395  T
Q  411 atgtgatgtgaaattact 428  Q
    || |||||| ||||||||    
T  31148396 atatgatgtaaaattact 31148413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 28307682 - 28307563
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||| | ||||| || ||||||| ||||||| | |||||||||||| |||| |||||||||||||||||| ||||||| |||| ||||||    
T  28307682 tcttatacataaactaccttaggtggcatacacccttttacacccacacacatttgcgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 28307583  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  28307582 tgatatgatgtaaaattact 28307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 36346751 - 36346633
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||||||||| || ||||||| ||||||| | || |||||||||||||| |||||||||||||||||| ||||||| ||||  |||||    
T  36346751 tcttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa-aggtga 36346653  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  36346652 tgatatgatgtaaaattact 36346633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 81 - 196
Target Start/End: Complemental strand, 21590625 - 21590510
Alignment:
Q  81 acgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccat 180  Q
    |||||||||||||| |||||||||||||| || |||||||| |||||| ||| |||||||||||||  || |||| |||||||| |||||||||||||||    
T  21590625 acgagcatcaccacaaaaaaccaacatcagccaccacaagcgtcaccatcaaaaaccaccacgagccccaccacaaaagacccaatatcagcaccaccat 21590526  T
Q  181 gaaaaccaccacaaaa 196  Q
      |||| |||||||||    
T  21590525 agaaactaccacaaaa 21590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 21807509 - 21807390
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | |||||| |||||||| |||||||||||| ||||||| ||||||| |||| || |||    
T  21807509 tcttatacatgaaccaccttagatggcatacaccattttacacccacacaaatttgtgatatgtggcaaaaatattgaaagaagagatgaaaatggatga 21807410  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||||| |||||||||||||    
T  21807409 tgatgttatgtgaaattact 21807390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 26972390 - 26972271
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||  |||||| |||| ||||||    
T  26972390 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttatgacacgtggcaaaaacattgaaaggagagatgaaaaagggtga 26972291  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  26972290 tgatatgatgtaaaattact 26972271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 34108430 - 34108549
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| |||||||||| ||||||| | |||||| ||||||||||| || |||||||||||||  ||||||| |||| ||||||    
T  34108430 tcttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacatatgacaaaaacattgaatgaagagatgaaaaagggtga 34108529  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  34108530 tgatatgatgtaaaattact 34108549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 30887704 - 30887826
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||| ||||||| || ||||||| ||||||| | |||| |||||||||||| || ||||||||||||||  ||||||| |||| ||||||    
T  30887704 tcttatacatgaacaatcttaggtggcatacacacttttacacccacatacatttgtgacacgtagcaaaaacattgaatgaagagatgaaaaagggtga 30887803  T
Q  409 tgatgtgatgtgaaattacttaa 431  Q
    |||| |||||| |||||||||||    
T  30887804 tgatatgatgtaaaattacttaa 30887826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 20086781 - 20086696
Alignment:
Q  343 cttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 428  Q
    ||||||| | |||| ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  20086781 cttttacacccacatacatttgagacatctggcaaaaacattaaaagaagagataaaaaggggtgatgatgtgatgtgaaattact 20086696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 356 - 428
Target Start/End: Original strand, 46475075 - 46475147
Alignment:
Q  356 acacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 428  Q
    |||||||||||||||||  |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  46475075 acacatttgtgacatgtaacaaaaacattgaaagaagagatgaaaaggggtgacgatgtgatgtgaaattact 46475147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 45782847 - 45782728
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| |||||  |||| || ||||||   |||||| | ||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  45782847 tcttatacatcaaccactttaggtggcatacatcattttacacccacacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtga 45782748  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  45782747 tgatatgatgtaaaattact 45782728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 353 - 428
Target Start/End: Original strand, 34828113 - 34828188
Alignment:
Q  353 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 428  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||||||| |||||| ||||||||    
T  34828113 cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtgatgatgatatgatgtaaaattact 34828188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 428
Target Start/End: Original strand, 38321014 - 38321132
Alignment:
Q  310 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 409  Q
    ||||||||| ||||||||||| || |||||||  ||| || | |||| ||| ||||||||||||||||||||||||||| |||| || | | | ||||||    
T  38321014 cttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggcaaaaacattgaaagaagatatgagaggaggtgat 38321113  T
Q  410 gatgtgatgtgaaattact 428  Q
    | |||||||||||| ||||    
T  38321114 ggtgtgatgtgaaagtact 38321132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 15020288 - 15020402
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||||||||| | ||| || ||||||  ||||||| | ||||  |||||||||||| ||||||||||||||||| ||||||   |||||||||| |    
T  15020288 ttatacataaaccaccataggtggcatacaaccttttacacccaca--catttgtgacatatggcaaaaacattgaaagaagaga-cgaaaggggtgaag 15020384  T
Q  411 atgtgatgtgaaattact 428  Q
    || |||||||||||||||    
T  15020385 atatgatgtgaaattact 15020402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 42950156 - 42950113
Alignment:
Q  353 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagat 396  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  42950156 cacacacatttgtgatatgtggcaaatacattgaaaaaagagat 42950113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 31039062 - 31039129
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccac 142  Q
    ||||| ||||| |||||||||||||||||||| || || |||  ||||||||||| || |||||||||    
T  31039062 gccaccacgagtatcaccaccaaaaaccaacaccaaccaccatgagcatcaccactaaaaaccaccac 31039129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 14022940 - 14023057
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||||||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |    
T  14022940 ttatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgacaaggggtgacg 14023039  T
Q  411 atgtgatgtgaaattact 428  Q
    ||||||||||||||||||    
T  14023040 atgtgatgtgaaattact 14023057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 24208450 - 24208567
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||||||||||| ||| ||  ||||||| |||||| | ||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||| |    
T  24208450 ttatacataaaccatcataggtggtatacactattttacacccacacacatttgtgatatgtggcaaaaacattgaaagaagagatgaaaaagggtgagg 24208549  T
Q  411 atgtgatgtgaaattact 428  Q
    ||||||||||||||||||    
T  24208550 atgtgatgtgaaattact 24208567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 3987092 - 3986973
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |||    
T  3987092 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagggatga 3986993  T
Q  409 tgatgtgatgtgaaattact 428  Q
    | || |||||| ||||||||    
T  3986992 taatatgatgtaaaattact 3986973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 13697573 - 13697691
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    ||||||||||||||||||||||||||||| ||| ||||||| | || |||||||||||| | |||| ||||||||||||| ||||||| |||| ||||||    
T  13697573 tcttatacataaaccatcttagatgacatgcacccttttacac-catacacatttgtgatacgtggtaaaaacattgaaagaagagatgaaaacgggtga 13697671  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||| | ||||||||    
T  13697672 tgatatgatataaaattact 13697691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 3118234 - 3118115
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    ||||||| || ||||| ||||| || ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| || |||| |||| |||||     
T  3118234 tcttatatatgaaccaccttaggtggcatacacccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaatagataaaaaagggtgg 3118135  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||  |||||| ||||||||    
T  3118134 tgacatgatgtaaaattact 3118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 15345844 - 15345727
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || |||| |||||||||| | || |||  ||||||||| |||||||||||||||||| || |||| ||||  |||||    
T  15345844 tcttatacatcaaccaccttaggtggcatatactcttttacacccataca--tttgtgacacgtggcaaaaacattgaaagaaaagatgaaaaaaggtga 15345747  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||| | ||||||||    
T  15345746 tgatatgatatcaaattact 15345727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 32747706 - 32747641
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccacc 140  Q
    ||||| || ||||||||||||||||||||||| || || |||  |||||||||||||| |||||||    
T  32747706 gccaccaccagcatcaccaccaaaaaccaacaccagccaccatgagcatcaccaccaaaaaccacc 32747641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 21881411 - 21881479
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatga 182  Q
    ||||||||| ||||||||| ||||||||||||   ||  ||| ||||||||  ||||||||||||||||    
T  21881411 ccacaagcaccaccaccaaaaaccaccacgagtcccacaacaaaagacccaaaatcagcaccaccatga 21881479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 6705564 - 6705682
Alignment:
Q  76 ccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcacc 175  Q
    |||| |||||||||||||||||||| ||||| || || |||| |||||||||||||| |||||||||||||| || |||| |||||| ||||||||||||    
T  6705564 ccaccacgagcatcaccaccaaaaaacaacaccagccaccacgagcatcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcacc 6705663  T
Q  176 accatgaaaaccaccacaa 194  Q
    |||||||||||||||||||    
T  6705664 accatgaaaaccaccacaa 6705682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 311 - 424
Target Start/End: Complemental strand, 37914421 - 37914308
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||||||||| ||||| || ||||||| |||||||   |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||     
T  37914421 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgata 37914322  T
Q  411 atgtgatgtgaaat 424  Q
    ||||||||||||||    
T  37914321 atgtgatgtgaaat 37914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 424
Target Start/End: Original strand, 36315565 - 36315680
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  36315565 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaagaggtga 36315664  T
Q  409 tgatgtgatgtgaaat 424  Q
    | ||||||||||||||    
T  36315665 taatgtgatgtgaaat 36315680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 44958117 - 44958236
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  44958117 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaagggtga 44958216  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  44958217 tgatatgatgtaaaattact 44958236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 33732573 - 33732692
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||     
T  33732573 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtgg 33732672  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  33732673 tgatatgatgtaaaattact 33732692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 37499052 - 37498931
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa--ggggt 406  Q
    ||||||| || ||||||||||  || ||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||    
T  37499052 tcttatatatcaaccatcttaactggcatacatccttttacactcacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagagggt 37498953  T
Q  407 gatgatgtgatgtgaaattact 428  Q
    |||||| |||||| ||||||||    
T  37498952 gatgatatgatgtaaaattact 37498931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 40900247 - 40900367
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcac 174  Q
    ||||| |||||||||||||| |||||||| ||||  || |||  || ||||||||||| | |||||||||||| || |||| ||||||||||||||||||    
T  40900247 gccaccacgagcatcaccacaaaaaaccagcatctgccaccatgagtatcaccaccaaaagccaccacgagcaccaccacaaaagacccagtatcagcac 40900346  T
Q  175 caccatgaaaaccaccacaaa 195  Q
    ||||||  |||||||||||||    
T  40900347 caccatagaaaccaccacaaa 40900367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 310 - 428
Target Start/End: Complemental strand, 3831081 - 3830965
Alignment:
Q  310 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 409  Q
    ||||||||| ||||| ||||| |||||||||| ||||||| | ||||||  ||||||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  3831081 cttatacatgaaccaccttaggtgacatacacccttttacacccacaca--tttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtggtgat 3830984  T
Q  410 gatgtgatgtgaaattact 428  Q
     || |||||| ||||||||    
T  3830983 tatctgatgtaaaattact 3830965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 14572999 - 14573118
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| ||||| || ||| ||| |||||||   ||||||||||||||||| || ||||||||||||||| |||||||  ||| ||||||    
T  14572999 tcttatacataaaccaccttaggtggcatccacccttttacatccacacacatttgtgacacgtagcaaaaacattgaaagaagagatggaaaagggtga 14573098  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  14573099 tgatatgatgtaaaattact 14573118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 353 - 428
Target Start/End: Complemental strand, 24137235 - 24137160
Alignment:
Q  353 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 428  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  24137235 cacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagggatgaggatgtgatgtgaaattact 24137160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 311 - 428
Target Start/End: Complemental strand, 6376418 - 6376306
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||     |||||||| ||||||| |||| |||||| |    
T  6376418 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc-----cattgaaagaagagatgaaaatgggtgagg 6376324  T
Q  411 atgtgatgtgaaattact 428  Q
    ||||||||||||||||||    
T  6376323 atgtgatgtgaaattact 6376306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 16089826 - 16089944
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||  || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| |||||| |||||  ||||     
T  16089826 tcttatacatgaaccaccttaagtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagaga-taaaaaaggtgg 16089924  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  16089925 tgatatgatgtaaaattact 16089944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 38531389 - 38531278
Alignment:
Q  84 agcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 183  Q
    |||||||| ||||||||| |||| || || |||| || |||||| |||| || ||||||||||| || |||| || |||||||||||||||||||||| |    
T  38531389 agcatcacaaccaaaaactaacaccagccaccacgagtatcaccgccaaaaatcaccacgagcaccaccacaaaaaacccagtatcagcaccaccatgga 38531290  T
Q  184 aaccaccacaaa 195  Q
    || |||||||||    
T  38531289 aaacaccacaaa 38531278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 41188824 - 41188892
Alignment:
Q  360 atttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 428  Q
    |||| |||||||||||||||||||||||||| || || ||||||| |||||||||||||| ||||||||    
T  41188824 atttatgacatgtggcaaaaacattgaaaaatgatatgaaaagggatgatgatgtgatgtaaaattact 41188892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 3921536 - 3921612
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacc 190  Q
    ||||||||||||||||||| |||||||||||||  |  |||| | ||||||  ||||||||||||| ||||||||||    
T  3921536 ccacaagcatcaccaccaaaaaccaccacgagccccgccacaaatgacccaaaatcagcaccaccaagaaaaccacc 3921612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 28164904 - 28164837
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccac 142  Q
    ||||| ||||| |||||||||||||||||||| || || |||  |||||||||||||| |||||||||    
T  28164904 gccaccacgagtatcaccaccaaaaaccaacaccaaccaccatgagcatcaccaccaaaaaccaccac 28164837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 17282123 - 17282046
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 191  Q
    |||||| |||||||||||| ||||||||||||   |  |||| ||||||||  ||||||||||||| |||||||||||    
T  17282123 ccacaaacatcaccaccaaaaaccaccacgagtcccgccacaaaagacccaaaatcagcaccaccaagaaaaccacca 17282046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 34660230 - 34660303
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 187  Q
    ||||||| | ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  34660230 ccacaagaaccaccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 34660303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 1895351 - 1895431
Alignment:
Q  111 ccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 191  Q
    |||||| ||||||||||||||| |||||||||||||  |  |||| ||||||||  ||||  ||||||| |||||||||||    
T  1895351 ccgccataagcatcaccaccaaaaaccaccacgagccccgccacaaaagacccaaaatcaataccaccaagaaaaccacca 1895431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 14950825 - 14950753
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagca 147  Q
    ||||| || |||||||||||||||||  |||| || ||||||| |||||||||||||| || |||||| ||||    
T  14950825 gccaccactagcatcaccaccaaaaaataacaccagccgccacgagcatcaccaccaaaaatcaccacaagca 14950753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 1551776 - 1551698
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 192  Q
    ||||||||||||||||| | |||||||||||||  |  |||  ||||||||  |||||||| |||| ||||||||||||    
T  1551776 ccacaagcatcaccacccaaaaccaccacgagccccgccactaaagacccaaaatcagcactaccaagaaaaccaccac 1551698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 30432343 - 30432462
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| |||||||| ||||||| ||||||  | ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  30432343 tcttatacatgaaccaccttagatggcatacacccttttatacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtga 30432442  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  30432443 tgatatgatgtaaaattact 30432462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 12665348 - 12665468
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagat-taaaaggggtg 407  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||  |||| |||||    
T  12665348 tcttatacatgaaccaccttaggtggcatacacccttttacactcacacacatttgtaacatgtggcaaaaacattgaaagaagagataaaaaaagggtg 12665447  T
Q  408 atgatgtgatgtgaaattact 428  Q
    ||||| |||||| ||||||||    
T  12665448 atgatatgatgtaaaattact 12665468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 42162602 - 42162721
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | || |||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  42162602 tcttatacatgaaccaccttaggtgtcatacacccttttacacccaaacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtga 42162701  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  42162702 tgatatgatgtaaaattact 42162721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 44081784 - 44081903
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | ||||||||||||| ||| |||| ||||||||||||| ||||||| |||| ||||||    
T  44081784 tcttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtaacacgtggaaaaaacattgaaagaagagatgaaaaagggtga 44081883  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| | |||| ||||||||    
T  44081884 tgatataatgtaaaattact 44081903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 33726017 - 33726135
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaag-gggtgat 409  Q
    ||||||||||||||  |||| || |||||||  |||||| | |||| ||||||||||||||||||||||||||||||| ||||||| ||||| || |||     
T  33726017 ttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaagtggatgac 33726116  T
Q  410 gatgtgatgtgaaattact 428  Q
    |||||||||||||||||||    
T  33726117 gatgtgatgtgaaattact 33726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 309 - 426
Target Start/End: Original strand, 36189220 - 36189337
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | |||| |||||||||||| |||||||||| ||||||| ||||||| |||||| ||||    
T  36189220 tcttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaggagtga 36189319  T
Q  409 tgatgtgatgtgaaatta 426  Q
    |||| |||| | ||||||    
T  36189320 tgatatgatataaaatta 36189337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 353 - 428
Target Start/End: Original strand, 31318853 - 31318928
Alignment:
Q  353 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 428  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||| |||||| ||||||||    
T  31318853 cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattact 31318928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 10203668 - 10203787
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| |||||||||  |||||||   ||||||||||||||||| ||| |||||| ||||||| ||||||| |||| |||||     
T  10203668 tcttatacatgaaccaccttaggtgacatacatccttttacatccacacacatttgtgacacgtgacaaaaatattgaaagaagagatgaaaaagggtgg 10203767  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||| | ||||||||    
T  10203768 tgatatgatataaaattact 10203787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 15050170 - 15050070
Alignment:
Q  92 caccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 191  Q
    |||||||||| | || || || |||| |||||||||||||| |||||||||||||| || |||| |||||| |||| ||||||||||||  |||||||||    
T  15050170 caccaaaaactagcaccagccaccacgagcatcaccaccaaaaaccaccacgagcaccaccacaaaagacctagtaccagcaccaccattgaaaccacca 15050071  T
Q  192 c 192  Q
    |    
T  15050070 c 15050070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 18184557 - 18184676
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    ||||||| || ||||| ||||  |||||||||| |||||||   |||||| |||||||||| ||||  |||||||||||  ||||||| |||||||||||    
T  18184557 tcttatatatgaaccaccttaagtgacatacacccttttacatccacacatatttgtgacacgtggtgaaaacattgaatgaagagatgaaaaggggtga 18184656  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||| | ||||||||    
T  18184657 tgatatgatataaaattact 18184676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 43186031 - 43186150
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| |||||  |||| || |||| |||||||||| |   ||||||||||||| |||||||||||||||||||| || |||| ||||  |||||    
T  43186031 tcttatacatcaaccactttaggtggcatatactcttttacacctgcacacatttgtgatatgtggcaaaaacattgaaagaaaagatgaaaaaaggtga 43186130  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||| | ||||||||    
T  43186131 tgatatgatataaaattact 43186150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 428
Target Start/End: Complemental strand, 38845165 - 38845091
Alignment:
Q  353 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 428  Q
    |||||||| ||||||||||||| ||||| ||||||| || |||| || |||||||||||||||||| |||||||||    
T  38845165 cacacacaattgtgacatgtggaaaaaatattgaaagaaaagat-aagaggggtgatgatgtgatgagaaattact 38845091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 31622 - 31547
Alignment:
Q  321 accatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagat 396  Q
    |||||||||| |  ||||||| |||| || | |||| ||| ||||||||||||||||||||||||||| |||||||    
T  31622 accatcttaggtagcatacacactttgacacccacatacaattgtgacatgtggcaaaaacattgaaagaagagat 31547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 25142964 - 25143031
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccac 142  Q
    ||||| ||||| |||||||||||||| ||||| || || |||  |||||||||||||| |||||||||    
T  25142964 gccaccacgagtatcaccaccaaaaatcaacaccaaccaccatgagcatcaccaccaaaaaccaccac 25143031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 6443980 - 6444057
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 192  Q
    |||| |||| ||||||||| ||||||  |||||| || |||| ||||||||  |||||| |||||||||||||||||||    
T  6443980 ccacgagcaccaccaccaa-aaccacttcgagcaccaccacaaaagacccaaaatcagccccaccatgaaaaccaccac 6444057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 428
Target Start/End: Complemental strand, 42668951 - 42668850
Alignment:
Q  326 cttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatt 425  Q
    ||||| || ||||||| |||| || | |||||||| |||||||| |||||||||||||| ||| |||| | | | || ||||||| | ||||||||||||    
T  42668951 cttaggtggcatacacactttgacacccacacacaattgtgacacgtggcaaaaacattaaaagaagata-tgagagaggtgatggtatgatgtgaaatt 42668853  T
Q  426 act 428  Q
    |||    
T  42668852 act 42668850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 1815803 - 1815684
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||||||||| |||||||||| |||||||   |||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  1815803 tcttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtga 1815704  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  1815703 tgatatgatgtaaaattact 1815684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 40888129 - 40888010
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| ||||| || ||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||     
T  40888129 tcttatacataaaccaccttaggtggcatacactcttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgg 40888030  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  40888029 tgatatgatgtaaaattact 40888010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 9408226 - 9408107
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| || || |||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  9408226 tcttatacatgaaccacctcaggtgacatacgcccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 9408127  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  9408126 tgatatgatgtaaaattact 9408107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 39370931 - 39371050
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  39370931 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtgccaaaaacattgaaagaagagatgaaaaagggtga 39371030  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  39371031 tgatatgatgtaaaattact 39371050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 2237282 - 2237399
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||| ||||| ||||| |||||||||| ||||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  2237282 ttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 2237381  T
Q  411 atgtgatgtgaaattact 428  Q
    || |||||| ||||||||    
T  2237382 atatgatgtaaaattact 2237399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 17225352 - 17225440
Alignment:
Q  340 actcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 428  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  17225352 actcttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagaggtgatgatgtgatgtgaaattact 17225440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 40680936 - 40681044
Alignment:
Q  83 gagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatga 182  Q
    |||||||||||||||||| |||||||| || |||| |||||||||||||| |||||||| ||||| || |||| |||||| ||||||| ||||||||| |    
T  40680936 gagcatcaccaccaaaaaacaacatcagccaccacgagcatcaccaccaaaaaccaccatgagcaccaccacaaaagaccaagtatcaacaccaccataa 40681035  T
Q  183 aaaccacca 191  Q
    |||||||||    
T  40681036 aaaccacca 40681044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 309 - 426
Target Start/End: Complemental strand, 4300730 - 4300613
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| |||||| |||| ||||||| |  ||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||| ||||  ||||     
T  4300730 tcttatacatgaaccattttaggtgacatatatccttttacacccacacatatttgtgacatatggcaaaaacattgaaataagagataaaaaatggtgg 4300631  T
Q  409 tgatgtgatgtgaaatta 426  Q
    ||||||||||||||||||    
T  4300630 tgatgtgatgtgaaatta 4300613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 320 - 426
Target Start/End: Original strand, 14831559 - 14831665
Alignment:
Q  320 aaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgt 419  Q
    ||||| ||||| || ||||||| ||||||| | ||||||||||||||| | |||||||||||||||||| ||||||| |||| |||||||||| ||||||    
T  14831559 aaccaccttaggtggcatacacccttttacacccacacacatttgtgatacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgt 14831658  T
Q  420 gaaatta 426  Q
     ||||||    
T  14831659 aaaatta 14831665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 13347134 - 13347251
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| || |||| |||| | ||||||    
T  13347134 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaatagatgaaaaagagtgatg 13347233  T
Q  411 atgtgatgtgaaattact 428  Q
    || ||||||  |||||||    
T  13347234 atatgatgtataattact 13347251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 33404623 - 33404531
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  33404623 tcttatacatgaaccaccttaggtgccatacacacttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa 33404531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 41004031 - 41003918
Alignment:
Q  314 tacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatg 413  Q
    ||||| |||||  |||| || ||||||| ||||||| |||| |||||||| |||||||||||||||| |||| ||||||| || ||||||| ||||||||    
T  41004031 tacatgaaccactttaggtggcatacacccttttacactcatacacatttatgacatgtggcaaaaatattg-aaaaagatataaaaagggatgatgatg 41003933  T
Q  414 tgatgtgaaattact 428  Q
    |||||| ||||||||    
T  41003932 tgatgtaaaattact 41003918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 27553560 - 27553441
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| |||||| |||| || |||| ||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||  ||||  |||||    
T  27553560 tcttatacatgaaccattttaggtggcatataccattttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagaagaaaaatggtga 27553461  T
Q  409 tgatgtgatgtgaaattact 428  Q
    | || |||||| ||||||||    
T  27553460 ttatctgatgtaaaattact 27553441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 31800596 - 31800681
Alignment:
Q  343 cttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 428  Q
    ||||||| | ||||||||||| ||||| |||||||||| ||||||| || |||| ||||||||||||||| |||||| ||||||||    
T  31800596 cttttacacccacacacatttatgacacgtggcaaaaatattgaaagaaaagatgaaaaggggtgatgatatgatgtaaaattact 31800681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 309 - 393
Target Start/End: Original strand, 12164255 - 12164339
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaaga 393  Q
    |||||||||| ||||||||||| || || ||| ||||| |  |||||||||| ||||| ||||||||||||||||||||| ||||    
T  12164255 tcttatacatgaaccatcttaggtggcacacattctttaatactcacacacagttgtggcatgtggcaaaaacattgaaagaaga 12164339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 394
Target Start/End: Complemental strand, 19596252 - 19596169
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagag 394  Q
    |||||||| ||||| ||||| || |||||||  ||||||   ||| |||||||||||||||||||||||||||||||| |||||    
T  19596252 ttatacatgaaccaccttaggtggcatacacctttttacatccacgcacatttgtgacatgtggcaaaaacattgaaagaagag 19596169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 26331201 - 26331090
Alignment:
Q  81 acgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccat 180  Q
    ||||||||||||||| ||||||||||||| || |||| |||||||||||||| ||| |  |||  || || |||| ||||| || ||||| |||||||||    
T  26331201 acgagcatcaccacctaaaaccaacatcagccaccacgagcatcaccaccaaaaactattacggacaccaccacaaaagactcaatatcaacaccaccat 26331102  T
Q  181 gaaaaccaccac 192  Q
      ||||||||||    
T  26331101 agaaaccaccac 26331090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 12156417 - 12156484
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccac 142  Q
    ||||| || |||||||||||||||||| |||| || || ||||||||||||||| ||| |||||||||    
T  12156417 gccaccactagcatcaccaccaaaaactaacaccagccaccacaagcatcaccatcaaaaaccaccac 12156484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 40599944 - 40599887
Alignment:
Q  135 accaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 192  Q
    ||||||||||||| || |||| |||||| ||||||| ||||||| |||||||||||||    
T  40599944 accaccacgagcaccaccacaaaagacctagtatcaacaccaccgtgaaaaccaccac 40599887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 7271788 - 7271851
Alignment:
Q  124 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 187  Q
    ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  7271788 caccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 7271851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 19124657 - 19124540
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    ||||||||||  || |||||||||| |||||||  ||| || | |||||||| ||||||| ||||||||||||||| ||| ||||||| |||    ||||    
T  19124657 tcttatacatggactatcttagatggcatacaca-tttgacacccacacacaattgtgacgtgtggcaaaaacatt-aaagaagagatgaaagaatgtga 19124560  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  19124559 tgatatgatgtaaaattact 19124540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 26656721 - 26656790
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 183  Q
    ||||||||| ||||||||| ||||||||||||| ||  |||| || | |||  |||||||||||||||||    
T  26656721 ccacaagcaccaccaccaaaaaccaccacgagcctcgccacaaaacaaccaaaatcagcaccaccatgaa 26656790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 26928308 - 26928377
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 183  Q
    ||||||||| ||||||||| ||||||||||||| ||  |||| || | |||  |||||||||||||||||    
T  26928308 ccacaagcaccaccaccaaaaaccaccacgagcctcgccacaaaacaaccaaaatcagcaccaccatgaa 26928377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 34574219 - 34574162
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaa 132  Q
    ||||| |||||||||||||||||||| ||||| || || | || ||||||||||||||    
T  34574219 gccaccacgagcatcaccaccaaaaatcaacaccagccactacgagcatcaccaccaa 34574162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 41355689 - 41355620
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 183  Q
    |||||||||| |||||||| |||||| ||||||  |  |||| ||||||||  |||||||||||||||||    
T  41355689 ccacaagcataaccaccaaaaaccactacgagccccgccacaaaagacccaaaatcagcaccaccatgaa 41355620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 424
Target Start/End: Complemental strand, 45829444 - 45829329
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| |||||  |||| ||||||||||  |||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  45829444 tcttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtga 45829345  T
Q  409 tgatgtgatgtgaaat 424  Q
    | ||||||||||||||    
T  45829344 taatgtgatgtgaaat 45829329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 424
Target Start/End: Original strand, 46192363 - 46192478
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| || || ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  46192363 tcttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtga 46192462  T
Q  409 tgatgtgatgtgaaat 424  Q
    | ||||||||||||||    
T  46192463 taatgtgatgtgaaat 46192478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 44275710 - 44275829
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| ||||| || |||| ||  |||||| ||||||||||||||||||| ||| |||||| ||||||| |||||||||||| ||||||    
T  44275710 tcttatacataaaccaccttaggtggcatataccattttacactcacacacatttgtgacacgtgccaaaaatattgaaagaagagattaaaaagggtga 44275809  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  44275810 tgatatgatgtaaaattact 44275829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 3672278 - 3672397
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  3672278 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 3672377  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| ||||||  |||||||    
T  3672378 tgatatgatgtataattact 3672397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 6112634 - 6112753
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  6112634 tcttatacatgaaccaccttagatggcatacaccattttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatga 6112733  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  6112734 tgatatgatgtaaaattact 6112753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 7217769 - 7217888
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| ||||| || ||||||| |||| || |  |||||||||||||||| |||||||||||||| ||| ||||||| |||| ||||||    
T  7217769 tcttatacataaaccaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggcaaaaacattaaaataagagataaaaaagggtga 7217868  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  7217869 tgatatgatgtaaaattact 7217888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 28093283 - 28093164
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||  |||||| |||| ||||||    
T  28093283 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaaggagagatgaaaaagggtga 28093184  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||| ||||    
T  28093183 tgatatgatgtaaaaatact 28093164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 49243819 - 49243938
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   |||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||    
T  49243819 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaaaagtga 49243918  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  49243919 tgatatgatgtaaaattact 49243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 21391142 - 21391023
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||| |||| | ||||    
T  21391142 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaatgagtga 21391043  T
Q  409 tgatgtgatgtgaaattact 428  Q
      || |||||| ||||||||    
T  21391042 atatatgatgtaaaattact 21391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 45873170 - 45873280
Alignment:
Q  81 acgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccat 180  Q
    |||||||||||||  ||||||||||| || || |||| |||||||||||||| ||||||||||| || || |||| |||||||| ||| | |||||||||    
T  45873170 acgagcatcaccataaaaaaccaacaccagccaccacgagcatcaccaccaaaaaccaccacgaacaccaccacaaaagacccaatattaacaccaccat 45873269  T
Q  181 gaaaaccacca 191  Q
    |||||||||||    
T  45873270 gaaaaccacca 45873280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 35544916 - 35545035
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||||||||| ||  ||||||  ||||||   |||| |||||||||| | |||||||||||||||||| |||| || |||||||||||    
T  35544916 tcttatacatgaaccatcttaggtggtatacaccattttacatccacatacatttgtgatacgtggcaaaaacattgaaagaagatataaaaaggggtga 35545015  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  35545016 tgatatgatgtaaaattact 35545035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 353 - 428
Target Start/End: Original strand, 51038811 - 51038887
Alignment:
Q  353 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa-ggggtgatgatgtgatgtgaaattact 428  Q
    |||||||| |||||||||||| |||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||    
T  51038811 cacacacaattgtgacatgtgacaaaaacattgaaagaagagatgaaaagggggtgatggtgtgatgtgaaattact 51038887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 55728754 - 55728871
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcac 174  Q
    ||||| || |||||||||||||||||| |||| |  || |||| |||||||||| ||| || ||||||||||| || |||| || |  |||||||| |||    
T  55728754 gccaccactagcatcaccaccaaaaactaacaccggccaccacgagcatcaccatcaaaaatcaccacgagcaccaccacaaaaaattcagtatcaacac 55728853  T
Q  175 caccatgaaaaccaccac 192  Q
    ||||||| ||||||||||    
T  55728854 caccatggaaaccaccac 55728871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 38093286 - 38093393
Alignment:
Q  84 agcatcaccaccaaaaaccaacatcatccgccacaagcatcaccacc-aagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatga 182  Q
    |||||||||||||||||| |||| || || |||| ||||||||| || || |||||||||||| | || |||| || ||||||||||| |||||||||      
T  38093286 agcatcaccaccaaaaactaacaccagccaccacgagcatcaccgccaaaaaaccaccacgagtaccaccacaaaaaacccagtatcaacaccaccatag 38093385  T
Q  183 aaaccacc 190  Q
    ||||||||    
T  38093386 aaaccacc 38093393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 42677688 - 42677627
Alignment:
Q  81 acgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccac 142  Q
    |||||||||||||||||||| ||||| || || |||||||||||||| |||| |||||||||    
T  42677688 acgagcatcaccaccaaaaatcaacaccagccaccacaagcatcaccgccaaaaaccaccac 42677627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 23054411 - 23054338
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 187  Q
    ||||||||| ||||||||| ||||| |||||||  |  |||| ||||||||  |||||||||||||||||||||    
T  23054411 ccacaagcaccaccaccaaaaaccatcacgagctccgccacaaaagacccaaaatcagcaccaccatgaaaacc 23054338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 47518629 - 47518552
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 191  Q
    |||||| |||||||||||| ||||||||||||| | | |||| |||| |||  ||||||| ||||| |||||||||||    
T  47518629 ccacaaacatcaccaccaaaaaccaccacgagccttaccacaaaagatccaaaatcagcaacaccaagaaaaccacca 47518552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 43245522 - 43245562
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttac 349  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  43245522 tcttatacatgaaccatcttagatgacatacacccttttac 43245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 426
Target Start/End: Original strand, 54849793 - 54849909
Alignment:
Q  310 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 409  Q
    ||||||||| ||||| |||||||  | ||||| |||| |  | ||||| || |||||||| ||| |||||| ||||||| ||||||| | |  || ||||    
T  54849793 cttatacatgaaccaccttagatagcgtacacactttgatacccacacgcagttgtgacaagtgacaaaaatattgaaagaagagatgagagaggatgat 54849892  T
Q  410 gatgtgatgtgaaatta 426  Q
    |||||||||||||||||    
T  54849893 gatgtgatgtgaaatta 54849909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 24957802 - 24957747
Alignment:
Q  92 caccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagca 147  Q
    ||||||||| ||||| || || ||||| ||||||||||||| ||||||||||||||    
T  24957802 caccaaaaaacaacaccagccaccacatgcatcaccaccaaaaaccaccacgagca 24957747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 12130576 - 12130633
Alignment:
Q  75 gccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaa 132  Q
    ||||| ||||||||||||||||||| |||| |||| || |||| | ||||||||||||    
T  12130576 gccaccacgagcatcaccaccaaaacccaaaatcagccaccacgaccatcaccaccaa 12130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 53202209 - 53202241
Alignment:
Q  114 ccacaagcatcaccaccaagaaccaccacgagc 146  Q
    ||||||||||||||||||| |||||||||||||    
T  53202209 ccacaagcatcaccaccaaaaaccaccacgagc 53202241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 46112131 - 46112012
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||||||||| ||||||||||  ||||||   |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  46112131 tcttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtga 46112032  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  46112031 tgatatgatgtaaaattact 46112012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 21559565 - 21559684
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||||||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||| |||| |||| |    
T  21559565 tcttatacataaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaagggtaa 21559664  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  21559665 tgatatgatgtaaaattact 21559684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 36749410 - 36749529
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  36749410 tcttatacatgaaccaccttagatgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 36749509  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  36749510 tgatatgatgtaaaattact 36749529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 311 - 428
Target Start/End: Complemental strand, 39467286 - 39467169
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||| ||||||||| | |||||||||||||| ||||||| | |||||| |||||||||||||| |||||| ||||||| ||||||| ||||||||||| |    
T  39467286 ttatccataaaccaccatagatgacatacacccttttacacccacacatatttgtgacatgtgccaaaaatattgaaagaagagatgaaaaggggtgagg 39467187  T
Q  411 atgtgatgtgaaattact 428  Q
    ||||||| ||||||||||    
T  39467186 atgtgatatgaaattact 39467169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 34750085 - 34749966
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  34750085 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 34749986  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  34749985 tgatatgatgtaaaattact 34749966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 36370525 - 36370406
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||    
T  36370525 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaaagggtga 36370426  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  36370425 tgatatgatgtaaaattact 36370406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 43999993 - 44000112
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  43999993 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 44000092  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  44000093 tgatatgatgtaaaattact 44000112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 311 - 419
Target Start/End: Complemental strand, 39072458 - 39072350
Alignment:
Q  311 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 410  Q
    |||||||| || || |||||||||||||||| ||||||| | |||| ||||||||||||||||||| ||||||| ||| ||||||| |||| ||||||||    
T  39072458 ttatacatgaatcaccttagatgacatacacccttttacacccacatacatttgtgacatgtggcataaacattaaaagaagagatgaaaatgggtgatg 39072359  T
Q  411 atgtgatgt 419  Q
    |||||||||    
T  39072358 atgtgatgt 39072350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 22894684 - 22894803
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  22894684 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatga 22894783  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| ||||||  |||||||    
T  22894784 tgatatgatgtataattact 22894803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 51339968 - 51339851
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||||||||| ||||| || ||||||  ||||||| | ||||||  ||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  51339968 tcttatacataaaccaccttaggtggcatacatccttttacacccacaca--tttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 51339871  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  51339870 tgatatgatgtaaaattact 51339851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 30735682 - 30735564
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    ||||||| || ||||| |||||||| ||||||| ||||||| | ||||||||| ||||||| |||||||||||||||||| |||| | ||||| ||||||    
T  30735682 tcttatatatgaaccaccttagatggcatacacccttttacacccacacacatctgtgacacgtggcaaaaacattgaaagaagata-taaaaagggtga 30735584  T
Q  409 tgatgtgatgtgaaattact 428  Q
    |||| |||||| ||||||||    
T  30735583 tgatatgatgttaaattact 30735564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 29460664 - 29460756
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  29460664 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatgaaaa 29460756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 29471516 - 29471608
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  29471516 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatgaaaa 29471608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 393
Target Start/End: Original strand, 38231297 - 38231381
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaaga 393  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  38231297 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaaga 38231381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 37067076 - 37067129
Alignment:
Q  255 accccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcgg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37067076 accccaaccataattcttgcaaagtaacccatgttttgtagctccagctggcgg 37067129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 20856334 - 20856221
Alignment:
Q  313 atacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgat 412  Q
    |||||| |||||  |||| || ||||||| ||||||| | || ||||||||||||||||||||||||||||||| |||||| | ||||| || |||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggcaaaaacattga-aaaagata-taaaaaggatgatgat 20856237  T
Q  413 gtgatgtgaaattact 428  Q
    ||||| | ||||||||    
T  20856236 gtgatataaaattact 20856221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 53638165 - 53638255
Alignment:
Q  335 catacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatt 425  Q
    ||||||| |||| || | |||||||| | ||||||||||| |||||||| |||| ||||||| | | |||||||||||||||||| |||||    
T  53638165 catacaccctttaacacccacacacaatcgtgacatgtggtaaaaacatggaaagaagagatgagagggggtgatgatgtgatgtaaaatt 53638255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 31699315 - 31699373
Alignment:
Q  136 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaa 194  Q
    |||||||||||| || |||| |||||||| || || |||||||||| ||||||||||||    
T  31699315 ccaccacgagcaccaccacaaaagacccaataccaacaccaccatggaaaccaccacaa 31699373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 29820483 - 29820390
Alignment:
Q  312 tatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaagggg 405  Q
    |||||||| |||| ||||| || ||||||| |||| || | |||| ||| |||||| |||| ||||||||||| ||| ||||||| | ||||||    
T  29820483 tatacatagaccaccttaggtggcatacacactttgacacccacatacaattgtgagatgtagcaaaaacattaaaagaagagatgagaagggg 29820390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 18269863 - 18269807
Alignment:
Q  135 accaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 191  Q
    ||||||||||||  || |||| ||||||||  |||| ||||||||||||||||||||    
T  18269863 accaccacgagccccaccacaaaagacccaaaatcaacaccaccatgaaaaccacca 18269807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 6722 - 6844
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 408  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  6722 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 6821  T
Q  409 tgatgtgatgtgaaattacttaa 431  Q
    |||| |||||| |||||||||||    
T  6822 tgatatgatgtaaaattacttaa 6844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 23272 - 23348
Alignment:
Q  119 agcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 195  Q
    |||||||| ||||| |||||||||||||| || |||| |||||| |||||||||||||||||| |||||||||||||    
T  23272 agcatcacaaccaaaaaccaccacgagcaccaccacaaaagacctagtatcagcaccaccatggaaaccaccacaaa 23348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 87350 - 87259
Alignment:
Q  309 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 401  Q
    |||||||||| ||||| ||||| || ||||||| ||| ||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  87350 tcttatacatgaaccaccttaggtggcatacacccttgtacac-cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa 87259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 42912 - 42826
Alignment:
Q  84 agcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatca 170  Q
    |||||||||||||||||| |||| |||||  |||  |||||||| |||| |||||||||||| | || |||| || ||| |||||||    
T  42912 agcatcaccaccaaaaactaacaccatccatcacgcgcatcaccgccaaaaaccaccacgagtaccaccacaaaaaacctagtatca 42826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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