View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20068_low_7 (Length: 372)
Name: NF20068_low_7
Description: NF20068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20068_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 91 - 372
Target Start/End: Original strand, 39290602 - 39290878
Alignment:
| Q |
91 |
aaaataagctataaatgacgaccatgaaaattcttttgtaaaatattgctgcacgtcaattttattggtgtgcggtgccaccttaccatgaccactgaaa |
190 |
Q |
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| T |
39290602 |
aaaataagctataaatgacgatcatgaaaattctttggtaaaatattgcagcacgtcaagtttattggtgtgc-----caccttaccatgaccactgaaa |
39290696 |
T |
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| Q |
191 |
aatcttttatttttaacctctgaaaaagaagctattctctatttctcttccatacggagttcttccctaagtgcggtgatgcaattttttatcaccattt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39290697 |
aatcttttatttttaacctctgaaaaagaagctattctctatttctcttccatacggagttcttccctaagtgcggtgatgcaattttttatcaccattt |
39290796 |
T |
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| Q |
291 |
aatcttcaaagagtttgttaaggttataagaaacaacataacgatgatcactgagaaaattcagacgtgtgcgagaaatatg |
372 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
39290797 |
gatcttcaaaaagtttgttaaggttataagaaacaacataacgatgatcactgagaaaattcagacgagttcgagaaatatg |
39290878 |
T |
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