View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20068_low_9 (Length: 237)

Name: NF20068_low_9
Description: NF20068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20068_low_9
NF20068_low_9
[»] chr4 (1 HSPs)
chr4 (1-123)||(54431266-54431388)
[»] chr6 (2 HSPs)
chr6 (2-196)||(17981205-17981391)
chr6 (25-182)||(17954168-17954315)
[»] chr1 (1 HSPs)
chr1 (2-166)||(2702420-2702578)
[»] scaffold0013 (1 HSPs)
scaffold0013 (2-166)||(14603-14761)
[»] chr2 (1 HSPs)
chr2 (40-166)||(24761143-24761260)
[»] chr3 (1 HSPs)
chr3 (93-187)||(22812150-22812244)
[»] chr8 (1 HSPs)
chr8 (25-81)||(18344639-18344695)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 54431388 - 54431266
Alignment:
Q  1 atcaagcttgtctcctcttttgacgcatttacttcacagttatctagtgtcgaaattccaaaaaatgtacaagaggctctagagtctagatcttccaaag 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54431388 atcaagcttgtctcctcttttgacgcatttacttcatagttatctagtgtcgaaattccaaaaaatgtacaagaggctctagagtctagatcttccaaag 54431289  T
Q  101 aggaaggaatttgtttttatgaa 123  Q
    |||||||||||||||||||||||    
T  54431288 aggaaggaatttgtttttatgaa 54431266  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 17981205 - 17981391
Alignment:
Q  2 tcaagcttgtctcctcttttgacgcatttacttcacagttatctagtgtcgaaattccaaaaaatgtacaagaggctctagagtctagatcttccaaaga 101  Q
    |||| ||||||||||||||  |||||||||||||||| |||||| |||| || |||||||||||||||||||| ||||||||       | ||||||||     
T  17981205 tcaaacttgtctcctctttc-acgcatttacttcacatttatcttgtgttgatattccaaaaaatgtacaagaagctctaga-------tattccaaagt 17981296  T
Q  102 ggaaggaatttgtttttatgaagatgaaagcttttgaaaagaataatacttagagtaccacaactttaccgacggtcaaaagaactatcgggtgt 196  Q
    | |||||||||||||||| ||||||||||||| ||||||||||||| || | |||| |||||||| || |||| |||||||||||||| ||||||    
T  17981297 gtaaggaatttgtttttaagaagatgaaagctcttgaaaagaataaaacatggagtgccacaactctatcgacagtcaaaagaactatggggtgt 17981391  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 17954168 - 17954315
Alignment:
Q  25 gcatttacttcacagttatctagtgtcgaaattccaaaaaatgtacaagaggctctagagtctagatcttccaaagaggaaggaatttgtttttatgaag 124  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||| | || ||||||||       | |||||||| |||||||||||||||||| ||||    
T  17954168 gcatttacttcacatttatctggtgtcgaaattccgaaaaatgtaaatgaagctctaga-------tattccaaagtggaaggaatttgtttttaagaag 17954260  T
Q  125 atgaaagcttttgaaaagaataatacttagagtaccacaactttaccgacggtcaaaa 182  Q
    | ||||| | ||||||||||||| || |||||| ||||||   |||||||||||||||    
T  17954261 acgaaagatcttgaaaagaataaaacctagagttccacaa---taccgacggtcaaaa 17954315  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 166
Target Start/End: Complemental strand, 2702578 - 2702420
Alignment:
Q  2 tcaagcttgtctcc-tcttttgacgcatttacttcacagttatctagtgtcgaaattccaaaaaatgtacaagaggctctagagtctagatcttccaaag 100  Q
    |||| ||||||||| |||||||  |||||||||||  | |||||||||||| ||||||| || |||||||| |||||||       ||||  |||| |||    
T  2702578 tcaaacttgtctccctcttttgctgcatttacttctaatttatctagtgtcaaaattcctaagaatgtacatgaggctc-------tagaaattcctaag 2702486  T
Q  101 aggaaggaatttgtttttatgaagatgaaagcttttgaaaagaataatacttagagtaccacaact 166  Q
     ||||||||  |||||||  | ||||||||||| ||||||||||| | |||| |||| ||||||||    
T  2702485 tggaaggaagctgtttttgaggagatgaaagctcttgaaaagaatgaaacttggagtgccacaact 2702420  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 14603 - 14761
Alignment:
Q  2 tcaagcttgtctcc-tcttttgacgcatttacttcacagttatctagtgtcgaaattccaaaaaatgtacaagaggctctagagtctagatcttccaaag 100  Q
    |||| ||||||||| |||||||  |||||||||||  |  ||||||||||| ||||||| || |||||||| |||||||||||    | |   |||||||    
T  14603 tcaaacttgtctccctcttttgctgcatttacttctaatatatctagtgtcaaaattcctaagaatgtacatgaggctctaga----aaa---tccaaag 14695  T
Q  101 aggaaggaatttgtttttatgaagatgaaagcttttgaaaagaataatacttagagtaccacaact 166  Q
     ||||||||  |||||||  | ||||||||||| ||||||||||| | |||| |||| ||||||||    
T  14696 tggaaggaagctgtttttgaggagatgaaagctcttgaaaagaatgaaacttggagtgccacaact 14761  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 24761260 - 24761143
Alignment:
Q  40 ttatctagtgtcgaaattccaaaaaatgtacaagaggctctagagtctagatcttccaaagaggaaggaatttgtttttatgaagatgaaagcttttgaa 139  Q
    |||||||||||| |||||||||| |||||||||||||||||| |         |||||||| ||||| || || |||||  | ||||||||||| |||||    
T  24761260 ttatctagtgtcaaaattccaaagaatgtacaagaggctctaaa---------ttccaaagtggaagtaagttattttttaggagatgaaagctcttgaa 24761170  T
Q  140 aagaataatacttagagtaccacaact 166  Q
    |||||||| |||| |||| || |||||    
T  24761169 aagaataaaacttggagtgccgcaact 24761143  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 22812244 - 22812150
Alignment:
Q  93 ttccaaagaggaaggaatttgtttttatgaagatgaaagcttttgaaaagaataatacttagagtaccacaactttaccgacggtcaaaagaact 187  Q
    |||||||| ||||||||  | |||||  | ||||||||||| ||||||||||||| |||| |||| |||||||| | ||||| |  |||||||||    
T  22812244 ttccaaagtggaaggaagctatttttgaggagatgaaagctcttgaaaagaataaaacttggagtgccacaactctgccgacaggtaaaagaact 22812150  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 18344695 - 18344639
Alignment:
Q  25 gcatttacttcacagttatctagtgtcgaaattccaaaaaatgtacaagaggctcta 81  Q
    |||||||| || ||||| |||| ||| |||||||| ||||||||||| |||||||||    
T  18344695 gcatttacctctcagttgtctactgtagaaattcccaaaaatgtacaggaggctcta 18344639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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