View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20069_high_2 (Length: 312)

Name: NF20069_high_2
Description: NF20069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20069_high_2
NF20069_high_2
[»] chr8 (1 HSPs)
chr8 (19-312)||(33658845-33659135)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 33659135 - 33658845
Alignment:
Q  19 cttaatggatttcttttcctgtttaagaaagnnnnnnnnnnnngtaatccatatactgtatggttgtgatggagttttgcaatgtttaggttatcctgaa 118  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33659135 cttaatggatttcttttcctgtttaagaaagaaaaaaaaa---gtaatccatatactgtatggttgtgatggagttttgcaatgtttaggttatcctgaa 33659039  T
Q  119 gaacctaccaccaaatcaatctcttatcaatgacatcatggatcgtgttaaggagttccttgtcagtaaggcattactaaaaggagatccctcaactatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33659038 gaacctaccaccaaatcaatctcttatcaatgacatcatggatcgtgttaaggagttccttgtcagtaaggcattactaaaaggagatccctcaactatt 33658939  T
Q  219 tcgaaccctttacgccgtcttcgtggagaaactgtaagttctgttctattgagcatggttctgttatcactctattctatatttttcttatctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33658938 tcgaaccctttacgccgtcttcgtggagaaactgtaagttctgttctattgagcatggttctgttatcactctattctatatttttcttatctt 33658845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University