View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20069_low_1 (Length: 453)
Name: NF20069_low_1
Description: NF20069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20069_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 37221812 - 37222248
Alignment:
| Q |
1 |
gcccaataatcatttatacaaacaccatttaagtaacttttgaattttatttctttctaaattttgctctgtttttgttatnnnnnnnttgttctgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37221812 |
gcccaataatcatttatacaaacaccatttaagtaacttttgaattttatttctttctaaattttgctctgtttttgttataaaaaaattgttctgtttt |
37221911 |
T |
|
| Q |
101 |
aataatcc-tttagaatgttaaaaaacgtttgattatggtatagttggttttcatggataagtaatcaataaatgatactattatattgaactttttaat |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37221912 |
aataatccgtttagaatgttaaaaaacgtttgat-atggtatagttggttttcatggataagtaatcaataaatgatactattatattgaactttttaat |
37222010 |
T |
|
| Q |
200 |
tgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttatatattgattgaatgatatgtttgtattttatgtatgatcactatcggttc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37222011 |
tgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttatatattgattgaatgatatgtttgtattttatgtatgatcactatcggttc |
37222110 |
T |
|
| Q |
300 |
ttttattattannnnnnnctttaaattttgcagatgaaaatggattttatgttcccttaccccctaggtaagttttattgtgttactcttcatacttagt |
399 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37222111 |
ttttattattatttttttctttaaattttgcagatgaaaatggattttatgttcccttaccccctaggtaagttttattgtgttactcttcatacttagt |
37222210 |
T |
|
| Q |
400 |
attcacaacaatgaaattgatttatgtttggttacatc |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37222211 |
attcacaacaatgaaattgatttatgtttggttacatc |
37222248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 151 - 384
Target Start/End: Original strand, 37230884 - 37231111
Alignment:
| Q |
151 |
tcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttata |
250 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| | |
|
|
| T |
37230884 |
tcatggatgagtaatcaataaatgataatattacatctaactttttaattgtttgttcctctatgttattgaaaaatgcattaagtgatgtttttttgtt |
37230983 |
T |
|
| Q |
251 |
tattgattgaatgatatgtttgtattttatgtatgatcactatcggttcttt--tattattannnnnnnctttaaattttgcagatgaaaatggatttta |
348 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| ||||| ||||||| | ||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
37230984 |
tattgat----tgatatgtttgcattttatgtatg---actatttgttcttttgttttattttttattccttt-aattttgcagatgaaaatggagttta |
37231075 |
T |
|
| Q |
349 |
tgttcccttaccccctaggtaagttttattgtgtta |
384 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
37231076 |
tgttcccttgccctctaggtaagtttcattgtgtta |
37231111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 153 - 384
Target Start/End: Original strand, 37227394 - 37227619
Alignment:
| Q |
153 |
atggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttatata |
252 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| | || |
|
|
| T |
37227394 |
atggatgagtaatcaataaatgataatattacatctaactttttaattgtttgttcctctatgttattgaaaaatgcattaagtgatgtttttttgttta |
37227493 |
T |
|
| Q |
253 |
ttgattgaatgatatgtttgtattttatgtatgatcactatcggttcttt--tattattannnnnnnctttaaattttgcagatgaaaatggattttatg |
350 |
Q |
| |
|
||||| ||| ||||||||||||||||||| ||||| |||||| | ||||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
37227494 |
ttgat----ggatctgtttgtattttatgtatg---actatttattcttttgttttattttttattccttt-aattttgcagatgaaaatggagtttatg |
37227585 |
T |
|
| Q |
351 |
ttcccttaccccctaggtaagttttattgtgtta |
384 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
37227586 |
ttcccttgccctctaggtaagtttcattgtgtta |
37227619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 37215949 - 37216038
Alignment:
| Q |
160 |
agtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttat |
249 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37215949 |
agtaatcaataaatgataatattatatcaaactttttatttgtttgttcctctgttttaatgaaaaatgcattaagtgatgtttgattat |
37216038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 37216107 - 37216181
Alignment:
| Q |
325 |
ttttgcagatgaaaatggattttatgttcccttaccccctaggtaagttttattgtgttactcttcatacttagt |
399 |
Q |
| |
|
||||||||||| ||||||| |||| || ||||| ||||||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
37216107 |
ttttgcagatggaaatggactttacgtacccttgccccctaagtaagttttattgtgtttcccttcatacttagt |
37216181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 414
Target Start/End: Original strand, 37441060 - 37441148
Alignment:
| Q |
326 |
tttgcagatgaaaatggattttatgttcccttaccccctaggtaagttttattgtgttactcttcatacttagtattcacaacaatgaa |
414 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| |||| |||||||||| | ||||| |||||| || ||| ||||||||||||| |
|
|
| T |
37441060 |
tttgcagataaaaatggagtttatgttcccttgccccacgagtaagttttaatcggttacccttcatgctcagtgctcacaacaatgaa |
37441148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University