View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20069_low_2 (Length: 451)
Name: NF20069_low_2
Description: NF20069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20069_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 25516962 - 25517229
Alignment:
| Q |
14 |
agggatgttctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttggcttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25516962 |
agggatgttctgtcccttttcttcttatggctgagtgtgttgccaaagagctaaaggaaactaagttaaggacccatgaaactagaagtcctttggcttt |
25517061 |
T |
|
| Q |
114 |
gaggattcgagtgctcgcaacaaatgcaactctaggagctgttttttataatggtaaatatgatagatggaataggtaacattcctcagtgaaattggtt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
25517062 |
gaggattcgagtgctcgcaacaaatgcaactctaggagctgtttttt-taatggtaaatatgatagatggaataggtaacgttcctcagtgaaattggct |
25517160 |
T |
|
| Q |
214 |
gctgatgcattagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttatt |
282 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25517161 |
gctgatacgttagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttatt |
25517229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 25525132 - 25524869
Alignment:
| Q |
14 |
agggatgttctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccat-gaaactagtagtcctttggctt |
112 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
25525132 |
agggatgtcctgtcccttttcttcatatgactgagtgtgttgccaaagagctaaaggaaactaagttaaatctccaacgaagctagtagtcctttggctt |
25525033 |
T |
|
| Q |
113 |
tgaggattcgagtgctcgcaacaaatgcaactctaggagctgttttttataatggtaaatatgatagatggaataggtaacattcctcagtgaaattggt |
212 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25525032 |
tgacgatttgagtgctcgcaacaaatgcaactctaggagccgttttttttta------atatgatagatggaacaggtaacattcctcagtgaaattggt |
25524939 |
T |
|
| Q |
213 |
tgctgatgcattagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttatt |
282 |
Q |
| |
|
|| |||||| || ||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
25524938 |
tgatgatgcgttgactgattactaataatttaccattcgctcctataattttcagattttatggtttatt |
25524869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 25540590 - 25540404
Alignment:
| Q |
96 |
tagtagtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttttttataatggtaaatatgatagatggaataggtaacat |
195 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| | ||||| | |
|
|
| T |
25540590 |
tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt |
25540491 |
T |
|
| Q |
196 |
tcctcagtgaaattggttgctgatgcattagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttatt |
282 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||| |
|
|
| T |
25540490 |
tcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttatt |
25540404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 25517614 - 25517688
Alignment:
| Q |
362 |
ttttgggtcgatttgcctgctttttatgtcgtgatttttgcatgttccattcatttcttcatgtacgtggttttt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25517614 |
ttttgggtcgatttgcctgctttttatgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttt |
25517688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 436
Target Start/End: Complemental strand, 25539963 - 25539889
Alignment:
| Q |
362 |
ttttgggtcgatttgcctgctttttatgtcgtgatttttgcatgttccattcatttcttcatgtacgtggttttt |
436 |
Q |
| |
|
|||| ||||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25539963 |
ttttaggtcgatttgcttgctttctttgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttt |
25539889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 25537656 - 25537546
Alignment:
| Q |
14 |
agggatgttctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttggcttt |
113 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||||||||||||||||| |||| |||| |||||||| | ||| |||| | ||||||||| ||||| |
|
|
| T |
25537656 |
agggatgttctgtccctttccttcatatgaatgagtgtgttgccaaagagataaatgaaattaagttaaagccccttgaagttgctagtccttttgcttt |
25537557 |
T |
|
| Q |
114 |
gaggattcgag |
124 |
Q |
| |
|
||||||||||| |
|
|
| T |
25537556 |
gaggattcgag |
25537546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 44461153 - 44461014
Alignment:
| Q |
19 |
tgttctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttggctttgagga |
118 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| || ||| | |||||| ||||||||| | | | |||| || ||||||||||| |||| |
|
|
| T |
44461153 |
tgttctgttccttttcttcatatggctgagtgtgttgcaaaggagcttaaggaagctaagttaaagccacttgaagctggtagtcctttg------agga |
44461060 |
T |
|
| Q |
119 |
ttcgagtgctcgcaacaaatgcaactctaggagctgttttttataa |
164 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
44461059 |
ttggagtgcttgcaacaaatgcaactctagcagctggtttttataa |
44461014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University