View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20069_low_4 (Length: 264)
Name: NF20069_low_4
Description: NF20069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20069_low_4 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 15284779 - 15285041
Alignment:
| Q |
2 |
ggcatatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15284779 |
ggcatatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtt |
15284878 |
T |
|
| Q |
102 |
tccttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgag |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15284879 |
tccttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgag |
15284978 |
T |
|
| Q |
202 |
acaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15284979 |
acaagtcaagatgaaaaacattggaaaagtttccactcccataagaagtgttaactgatgaca |
15285041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 15465148 - 15465410
Alignment:
| Q |
2 |
ggcatatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15465148 |
ggcatatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtt |
15465247 |
T |
|
| Q |
102 |
tccttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgag |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15465248 |
tccttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgag |
15465347 |
T |
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| Q |
202 |
acaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15465348 |
acaagtcaagatgaaaaacattggaaaagtttccactcccataagaagtgttaactgatgaca |
15465410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 15303294 - 15303556
Alignment:
| Q |
2 |
ggcatatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtt |
101 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||| |
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| T |
15303294 |
ggcatatggaagagacgggctcaaactttcaagtgagcaactactcaaatataactcagaaagtgaaggaagcatattcaatatctgaagccaatgtgtt |
15303393 |
T |
|
| Q |
102 |
tccttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgag |
201 |
Q |
| |
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|||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15303394 |
tccttgtggatattaacataatccaggttgataaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgag |
15303493 |
T |
|
| Q |
202 |
acaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
264 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15303494 |
acaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
15303556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 15483663 - 15483925
Alignment:
| Q |
2 |
ggcatatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtt |
101 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||| |
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| T |
15483663 |
ggcatatggaagagacgggctcaaactttcaagtgagcaactactcaaatataactcagaaagtgaaggaagcatattcaatatctgaagccaatgtgtt |
15483762 |
T |
|
| Q |
102 |
tccttgtggagattaacggaattcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgag |
201 |
Q |
| |
|
|||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15483763 |
tccttgtggatattaacataatccaggttgataaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgag |
15483862 |
T |
|
| Q |
202 |
acaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15483863 |
acaagtcaagatgaaaaacattggaaaagtttccactcccatgagaagtgttaactgatgaca |
15483925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 15447063 - 15447297
Alignment:
| Q |
23 |
cacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaa |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| || |
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| T |
15447063 |
cacactttcaagtaagcaactactcaaatgtaactcagaaagtgaaggaagcatattcaatatctgaagccaaagcgtttccttgtggagatcaacataa |
15447162 |
T |
|
| Q |
123 |
ttcaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacat |
222 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
15447163 |
tccaggttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaaggtgaacaacat |
15447262 |
T |
|
| Q |
223 |
tggaaaagtttccactcccatgagaagtgttaact |
257 |
Q |
| |
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| ||||||||||||||||||| ||||||||||||| |
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| T |
15447263 |
ttgaaaagtttccactcccataagaagtgttaact |
15447297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 47 - 264
Target Start/End: Original strand, 15314204 - 15314421
Alignment:
| Q |
47 |
caaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaattcaggttgagaaattgtaaggat |
146 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||| ||||||||| | |||||| | ||||||| || ||| | |||||||||||||||||||||| |
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|
| T |
15314204 |
caaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaaggat |
15314303 |
T |
|
| Q |
147 |
gatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgag |
246 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15314304 |
gacgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgag |
15314403 |
T |
|
| Q |
247 |
aagtgttaactgatgaca |
264 |
Q |
| |
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|||||||||||||||||| |
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| T |
15314404 |
aagtgttaactgatgaca |
15314421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 47 - 264
Target Start/End: Original strand, 15494573 - 15494790
Alignment:
| Q |
47 |
caaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaattcaggttgagaaattgtaaggat |
146 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||| ||||||||| | |||||| | ||||||| || ||| | |||||||||||||||||||||| |
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|
| T |
15494573 |
caaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttccctatggagatcaatggagtccaggttgagaaattgtaaggat |
15494672 |
T |
|
| Q |
147 |
gatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgag |
246 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15494673 |
gacgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaaaagtttccactcccatgag |
15494772 |
T |
|
| Q |
247 |
aagtgttaactgatgaca |
264 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15494773 |
aagtgttaactgatgaca |
15494790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 18052811 - 18053015
Alignment:
| Q |
28 |
tttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttgtggagattaacggaattcag |
127 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||| ||||||| |||| | || | ||||||||||| |||| ||| | |||| || | ||| | |
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|
| T |
18052811 |
tttcaagtaagcaactactcaaatgtaactcagaaagcgaaggaagcatagttaacatttgaagccaatgattttctttgcgaagatcaatgaaatcaaa |
18052910 |
T |
|
| Q |
128 |
gttgagaaattgtaaggatgatgagagacgaagaagccatctcaaatcattaatcacaagattctcattttgagacaagtcaagatgaaaaacattggaa |
227 |
Q |
| |
|
||||||| ||| ||| |||||| || |||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||| ||||| |||| |
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| T |
18052911 |
gttgagatattctaatgatgat---aggcgaagaagccatttcaaatcatcaatcacaagattctcatttcctgacaaatcaagatgaacaacatcggaa |
18053007 |
T |
|
| Q |
228 |
aagtttcc |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
18053008 |
aagtttcc |
18053015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 15298533 - 15298603
Alignment:
| Q |
2 |
ggcatatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaa |
72 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
15298533 |
ggcatatggaagtgacgagctcaaactttcaagtgagccactactcaaatataactctgaaagtgaaggaa |
15298603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 15478902 - 15478972
Alignment:
| Q |
2 |
ggcatatggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaa |
72 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
15478902 |
ggcatatggaagtgacgagctcaaactttcaagtgagccactactcaaatataactctgaaagtgaaggaa |
15478972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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