View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20069_low_5 (Length: 254)
Name: NF20069_low_5
Description: NF20069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20069_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 2440585 - 2440808
Alignment:
| Q |
11 |
cataggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2440585 |
cataggttgagtactattcaaaactgtgatttgattgctgttttggataagggaattgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
2440684 |
T |
|
| Q |
111 |
caagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctgattcttggcatgaaattaactaaataaacatgatcaagtt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2440685 |
caagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctgattcttgccatgaaattaactaaataaacatgatcaagtt |
2440784 |
T |
|
| Q |
211 |
tccatgtttaaaggtagaagctat |
234 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2440785 |
tccatgtttaaaggtagaagctat |
2440808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 2592531 - 2592731
Alignment:
| Q |
11 |
cataggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592531 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
2592630 |
T |
|
| Q |
111 |
caagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctgattcttggcatgaaattaactaaataaacatgatcaagtt |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||||||| ||| |||||| |||||||| |||||||| ||||||||||||| |||||||| |
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| T |
2592631 |
caagtggagcatattactctttgataagtctaaaaataagaccaaccaacataattattgattcttcacatgaaatcaactaaataaacaatatcaagtt |
2592730 |
T |
|
| Q |
211 |
t |
211 |
Q |
| |
|
| |
|
|
| T |
2592731 |
t |
2592731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 2624075 - 2624264
Alignment:
| Q |
11 |
cataggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
2624075 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaatggaacacattcatccttgttgtctaaagggc |
2624174 |
T |
|
| Q |
111 |
caagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctgattcttggcatgaaattaactaaataaaca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||| ||| ||||||| ||||||| ||||||||||| |||||||||| |
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|
| T |
2624175 |
caagtggagcatattactctttgataagtctacaaaaaagaccaaccaacataattgttgattctccacatgaaattaaataaataaaca |
2624264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 2672114 - 2671914
Alignment:
| Q |
11 |
cataggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
110 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2672114 |
cataggttgagtactatacaaaattgcgatttgattgctgttttagacaagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
2672015 |
T |
|
| Q |
111 |
caagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctgattcttggcatgaaattaactaaataaacatgatcaagtt |
210 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| || | | |||||||| |||||||| ||||||||||||| |||||||| |
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|
| T |
2672014 |
caagtggagcttattactctttggtaagtctacaaagaagaccaaccaacattactattgattcttcacatgaaatcaactaaataaacaatatcaagtt |
2671915 |
T |
|
| Q |
211 |
t |
211 |
Q |
| |
|
| |
|
|
| T |
2671914 |
t |
2671914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 2640954 - 2640732
Alignment:
| Q |
11 |
cataggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||| || | |
|
|
| T |
2640954 |
cataggttgagtactatacaaaattgtgatttgattgctgttttggataaggggattgttgttgaaaaaggaacacattcatctttgttgtctttgggac |
2640855 |
T |
|
| Q |
111 |
caagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctgattcttggcatgaaattaactaaataaacatgatcaagtt |
210 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||| || ||||| |||||||| ||||||||||||| | || | || |
|
|
| T |
2640854 |
caagtggagtttattactctttagtaagtctacaaagaagaccaaccaatacaattgttggttcttcacatgaaatcaactaaataaacaaggtcgattt |
2640755 |
T |
|
| Q |
211 |
tccatgtttaaaggtagaagcta |
233 |
Q |
| |
|
||||||||| |||| |||||||| |
|
|
| T |
2640754 |
tccatgtttgaaggaagaagcta |
2640732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 2451307 - 2451467
Alignment:
| Q |
11 |
cataggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2451307 |
cataggttgagtactatacaaaattgtgatatgattgttgttttggataagggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggac |
2451406 |
T |
|
| Q |
111 |
caagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctga |
171 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
2451407 |
caagtggagcttattactctatggtaagtctacaaagaagaccacccaatacaattgctga |
2451467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 2568739 - 2568550
Alignment:
| Q |
11 |
cataggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
2568739 |
cataggttgagtactatacaaaattgtgatttgattgctgttttggataagggcattgttgttgagaaaggaacacattcaaatttattgtcaaaagggc |
2568640 |
T |
|
| Q |
111 |
caagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctgattcttggcatgaaattaactaaataaaca |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||| |||||||||||||||||| ||||| | |||||| |||||||| ||||||||||||| |
|
|
| T |
2568639 |
caagtggtgcttattactctttggtaagtctgcaaagaagaccaaacaatttaatttcgtattcttcacatgaaatcaactaaataaaca |
2568550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 2596298 - 2596074
Alignment:
| Q |
11 |
cataggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||| ||| || | |
|
|
| T |
2596298 |
cataggttgagtactatacaaaattgtgatttgattgctgtcttggataagggaattgttgttgagaaaggaacacattcgtctttgttatctttgggac |
2596199 |
T |
|
| Q |
111 |
caagtggagcatattactctttggtaagtctacaaagaagac--caaacaatataattgctgattcttggcatgaaattaactaaataaacatgatcaag |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||||||| | || || |
|
|
| T |
2596198 |
caagtggagtttattactctttggtaagtctacaaagaagactataaccaatacaattgttgattcttcacatgaaatcaactaaataaacaaggtccag |
2596099 |
T |
|
| Q |
209 |
tttccatgtttaaaggtagaagcta |
233 |
Q |
| |
|
||||||||||| |||| |||||||| |
|
|
| T |
2596098 |
tttccatgtttgaagggagaagcta |
2596074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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