View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2006_high_2 (Length: 729)

Name: NF2006_high_2
Description: NF2006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2006_high_2
NF2006_high_2
[»] chr2 (80 HSPs)
chr2 (193-723)||(39222497-39223027)
chr2 (193-450)||(39192341-39192598)
chr2 (193-450)||(39198021-39198278)
chr2 (284-530)||(39389129-39389375)
chr2 (18-114)||(39223100-39223196)
chr2 (565-692)||(39603169-39603296)
chr2 (497-669)||(39136906-39137078)
chr2 (498-669)||(39390036-39390207)
chr2 (515-669)||(38792735-38792889)
chr2 (291-463)||(39161714-39161886)
chr2 (291-463)||(39207308-39207480)
chr2 (497-669)||(39415644-39415816)
chr2 (291-453)||(39215514-39215676)
chr2 (193-314)||(39388996-39389117)
chr2 (497-620)||(39222138-39222261)
chr2 (197-314)||(39161905-39162022)
chr2 (197-314)||(39207172-39207289)
chr2 (497-620)||(39221928-39222051)
chr2 (556-669)||(39415451-39415564)
chr2 (22-113)||(39192234-39192325)
chr2 (574-669)||(39390532-39390627)
chr2 (334-451)||(39397891-39398008)
chr2 (498-586)||(39389868-39389956)
chr2 (321-456)||(39137761-39137896)
chr2 (22-113)||(39197914-39198005)
chr2 (574-669)||(39390322-39390417)
chr2 (193-288)||(39215721-39215813)
chr2 (574-669)||(39137317-39137412)
chr2 (296-447)||(39369996-39370147)
chr2 (574-665)||(39451746-39451837)
chr2 (292-455)||(39459132-39459295)
chr2 (295-466)||(39468208-39468379)
chr2 (498-572)||(39390708-39390782)
chr2 (498-600)||(39602799-39602901)
chr2 (577-658)||(39602993-39603074)
chr2 (589-700)||(39222310-39222421)
chr2 (498-562)||(39389469-39389533)
chr2 (284-416)||(39414774-39414906)
chr2 (393-456)||(39137719-39137782)
chr2 (591-670)||(39473898-39473977)
chr2 (498-572)||(39221430-39221504)
chr2 (589-655)||(39389707-39389773)
chr2 (589-702)||(39192590-39192703)
chr2 (589-702)||(39198270-39198383)
chr2 (200-277)||(39421677-39421754)
chr2 (292-425)||(39473409-39473542)
chr2 (574-658)||(38792998-38793082)
chr2 (577-669)||(38793240-38793332)
chr2 (290-366)||(39381509-39381585)
chr2 (651-723)||(39458906-39458978)
chr2 (231-279)||(39473285-39473333)
chr2 (553-616)||(39192680-39192743)
chr2 (553-616)||(39198360-39198423)
chr2 (292-423)||(39421832-39421963)
chr2 (635-701)||(39221163-39221229)
chr2 (400-466)||(44895631-44895697)
chr2 (624-669)||(39221711-39221756)
chr2 (216-257)||(39468447-39468488)
chr2 (223-271)||(39137997-39138045)
chr2 (22-106)||(39162049-39162132)
chr2 (22-106)||(39207062-39207145)
chr2 (56-104)||(39381276-39381324)
chr2 (614-669)||(38792476-38792531)
chr2 (662-709)||(39152273-39152320)
chr2 (393-456)||(39152463-39152526)
chr2 (543-646)||(39222238-39222341)
chr2 (212-279)||(39381368-39381435)
chr2 (543-586)||(39398184-39398227)
chr2 (565-664)||(39458587-39458686)
chr2 (221-263)||(39370243-39370285)
chr2 (22-104)||(39388887-39388969)
chr2 (393-455)||(39458469-39458531)
chr2 (218-279)||(39152694-39152755)
chr2 (60-113)||(39215829-39215882)
chr2 (397-466)||(39222397-39222466)
chr2 (28-113)||(39370332-39370417)
chr2 (399-452)||(39451812-39451865)
chr2 (218-271)||(39459379-39459432)
chr2 (543-616)||(39467974-39468047)
chr2 (650-723)||(39487829-39487902)
[»] chr5 (5 HSPs)
chr5 (284-530)||(33560819-33561065)
chr5 (497-617)||(33560522-33560642)
chr5 (195-284)||(33561107-33561196)
chr5 (498-599)||(33560624-33560725)
chr5 (31-106)||(33561225-33561301)
[»] chr6 (2 HSPs)
chr6 (295-456)||(16113178-16113339)
chr6 (202-281)||(16113416-16113495)
[»] chr7 (6 HSPs)
chr7 (574-669)||(19807267-19807362)
chr7 (321-456)||(19807711-19807846)
chr7 (393-453)||(19807672-19807732)
chr7 (553-620)||(19807190-19807257)
chr7 (224-271)||(19807947-19807994)
chr7 (597-670)||(19807014-19807087)
[»] chr3 (2 HSPs)
chr3 (388-456)||(51574946-51575014)
chr3 (650-704)||(51575181-51575235)


Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 80)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 193 - 723
Target Start/End: Complemental strand, 39223027 - 39222497
Alignment:
Q  193 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39223027 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttctccatcaatatattttttccttgacacag 39222928  T
Q  293 gatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcc 392  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  39222927 gatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgttc 39222828  T
Q  393 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgatgcgagttcctcctcctttgattttatgtccctcact 492  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  39222827 ttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttgattcgagttcctcctcctttgattttatgtccttcact 39222728  T
Q  493 tgttcttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgct 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39222727 tgttcttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgct 39222628  T
Q  593 tctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagattcaaa 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39222627 tctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcattcggccttcaaagtcatcctctttagattcaaa 39222528  T
Q  693 ctccttcactcggccataaaatttcttctct 723  Q
    ||||||||||||||||| |||||||||||||    
T  39222527 ctccttcactcggccatcaaatttcttctct 39222497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 193 - 450
Target Start/End: Original strand, 39192341 - 39192598
Alignment:
Q  193 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 292  Q
    ||||||||| ||||| || |||||| | |||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||    
T  39192341 taagaggaatagttgcaatgaaattctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatactttttccttgacgcag 39192440  T
Q  293 gatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcc 392  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||    
T  39192441 gatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtcc 39192540  T
Q  393 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttt 450  Q
    ||| |||||||||||||||||||| || ||||| ||||| ||||  ||||||||||||    
T  39192541 ttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttcttt 39192598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 193 - 450
Target Start/End: Original strand, 39198021 - 39198278
Alignment:
Q  193 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 292  Q
    ||||||||| ||||| || |||||| | |||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||    
T  39198021 taagaggaatagttgcaatgaaattctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatactttttccttgacgcag 39198120  T
Q  293 gatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcc 392  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||    
T  39198121 gatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtcc 39198220  T
Q  393 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttt 450  Q
    ||| |||||||||||||||||||| || ||||| ||||| ||||  ||||||||||||    
T  39198221 ttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttcttt 39198278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 284 - 530
Target Start/End: Original strand, 39389129 - 39389375
Alignment:
Q  284 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttatt 383  Q
    ||||| ||||||| |||||||| |||||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||    |||| ||||  ||    
T  39389129 ttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatactctttcaactccagttcgtt 39389228  T
Q  384 ccatcgtccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgatgcgagttcctcctcctttgattttatg 483  Q
    |||||||| || |||| ||| |||||||||||| |||||||| ||||||||||  ||||||| ||||| |||| |||||||||||||||||||||| |||    
T  39389229 ccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaacttggcttttcaaatgctccttttgtgattcgagttcctcctcctttgatttaatg 39389328  T
Q  484 tccctcacttgttcttcaaattccttctcctttgattcaaactcctt 530  Q
     || ||||||||||||||||||||| ||| ||||||| |||||||||    
T  39389329 cccttcacttgttcttcaaattcctcctcttttgattgaaactcctt 39389375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 39223196 - 39223100
Alignment:
Q  18 atacgaaaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39223196 atacgaaaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaag 39223100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 565 - 692
Target Start/End: Complemental strand, 39603296 - 39603169
Alignment:
Q  565 aactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggc 664  Q
    |||||||  |||||||||||||  |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39603296 aactcctccacttggctttcaaaatgcttctttttagattccagctccttcgcttgaatttcaaattctctctcttttgattcatgctccttcgctcggc 39603197  T
Q  665 cttcaaagtcatcctctttagattcaaa 692  Q
    ||||||| ||||||||||| ||||||||    
T  39603196 cttcaaattcatcctcttttgattcaaa 39603169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 497 - 669
Target Start/End: Complemental strand, 39137078 - 39136906
Alignment:
Q  497 cttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttctt 596  Q
    ||||||||||| |||| ||||||| ||||||||| |||| |  || ||||||||| ||||||||||||||| |||| |||||| |||||| | | |||||    
T  39137078 cttcaaattccatctcttttgatttaaactccttcatttggtctacaagttggttttcttttgactctaacgccttgacttggatttcaaacagtttctt 39136979  T
Q  597 tttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    |||| ||||| ||||| |||||||  ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  39136978 tttaaattgctgctccatcacttggctttcaaattctctctcttttgatgcatgctccttcacccggccttca 39136906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 498 - 669
Target Start/End: Original strand, 39390036 - 39390207
Alignment:
Q  498 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 597  Q
    ||||||||||||||||||  | ||||| || |||| ||| | || ||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||    
T  39390036 ttcaaattccttctccttaaactcaaaatcttttacttttcctacaagttcgttacctttagactctaactccttaacttggctttcgacctgcttcttt 39390135  T
Q  598 ttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    ||||||| ||| ||||||| |||   |||||| ||||||||||| |||||||||||||||||||||| ||||    
T  39390136 ttagattccagttccttcatttggccttcaaaatctctctctttggattcatgctccttcactcggctttca 39390207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 515 - 669
Target Start/End: Complemental strand, 38792889 - 38792735
Alignment:
Q  515 ttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctcctt 614  Q
    |||| ||||||||||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||| |   |||| |||||||| | | |||||    
T  38792889 ttgactcaaactccttcattttgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaatttctgtttagattcctggtcctt 38792790  T
Q  615 cacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    |||||||  |||||||||||||||||||||||| ||||||||||| |||||||||    
T  38792789 cacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttca 38792735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 291 - 463
Target Start/End: Complemental strand, 39161886 - 39161714
Alignment:
Q  291 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgt 390  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||| | ||| |||||| ||||| ||||   | ||| |||| |||||| |||    
T  39161886 aggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactctttcgtctccagttcattccaccgt 39161787  T
Q  391 ccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgatgcgagtt 463  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||| |||||||| ||||||||| ||||||    
T  39161786 ccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgagtt 39161714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 291 - 463
Target Start/End: Original strand, 39207308 - 39207480
Alignment:
Q  291 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgt 390  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||| | ||| |||||| ||||| ||||   | ||| |||| |||||| |||    
T  39207308 aggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactctttcgtctccagttcattccaccgt 39207407  T
Q  391 ccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgatgcgagtt 463  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||| |||||||| ||||||||| ||||||    
T  39207408 ccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgagtt 39207480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 497 - 669
Target Start/End: Original strand, 39415644 - 39415816
Alignment:
Q  497 cttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttctt 596  Q
    ||||||||||| |||| ||||||| ||||||||| |||| |  ||  ||||| |  |||||||||||||||||||| |||||| |||||| | |||||||    
T  39415644 cttcaaattccctctcttttgatttaaactccttcatttggtctacgagttgctgttcttttgactctaactccttgacttggatttcaaacagcttctt 39415743  T
Q  597 tttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    |||||||| |||||||||||| ||   |||||||||||||||||||||| ||||||| ||||| |||||||||    
T  39415744 tttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttca 39415816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 291 - 453
Target Start/End: Complemental strand, 39215676 - 39215514
Alignment:
Q  291 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgt 390  Q
    ||||||||||||||||||| |||||  ||| |||||||| |||| |||||| |||| | |||||||||||||||||  | |||||||||  ||||| |||    
T  39215676 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 39215577  T
Q  391 ccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttctttttt 453  Q
    ||||||||||||||||||||||||| ||||  ||| ||||| ||||| || ||||||||||||    
T  39215576 ccttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttctttttt 39215514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 39388996 - 39389117
Alignment:
Q  193 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 292  Q
    ||||||||||||||||||| ||||| |||||||||||  |||||||||||||||||||| |||||||||||  |||||| |||||||||||||||| | |    
T  39388996 taagaggaacagttgtaaaaaaattctttcaataaactggatgaataagaacatttaccggattctttttccccatcaaaatattttttccttgactcgg 39389095  T
Q  293 gatccttgacttgtccttcaaa 314  Q
    | ||||| | |||||| |||||    
T  39389096 gctcctttatttgtccatcaaa 39389117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 497 - 620
Target Start/End: Complemental strand, 39222261 - 39222138
Alignment:
Q  497 cttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttctt 596  Q
    ||||||||||| |||| ||||||| ||||| | | | || || || |||||||||||||||||||| ||||||||| ||||||||||||| | |||||||    
T  39222261 cttcaaattccctctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttctt 39222162  T
Q  597 tttagattgcagctccttcacttg 620  Q
    |||||||| |||||||||||||||    
T  39222161 tttagattccagctccttcacttg 39222138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 39162022 - 39161905
Alignment:
Q  197 aggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacaggatc 296  Q
    |||||||||| |||  ||||| ||||||||| | ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||    
T  39162022 aggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctc 39161923  T
Q  297 cttgacttgtccttcaaa 314  Q
    ||| | |||||| |||||    
T  39161922 ctttagttgtccatcaaa 39161905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 39207172 - 39207289
Alignment:
Q  197 aggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacaggatc 296  Q
    |||||||||| |||  ||||| ||||||||| | ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||    
T  39207172 aggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctc 39207271  T
Q  297 cttgacttgtccttcaaa 314  Q
    ||| | |||||| |||||    
T  39207272 ctttagttgtccatcaaa 39207289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 497 - 620
Target Start/End: Complemental strand, 39222051 - 39221928
Alignment:
Q  497 cttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttctt 596  Q
    ||||||||| | |||| ||||||| ||||| | | | || || || |||||||||||||||||||| ||||||||| ||||||||||||| | |||||||    
T  39222051 cttcaaattgcctctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttctt 39221952  T
Q  597 tttagattgcagctccttcacttg 620  Q
    |||||||| |||||||||||||||    
T  39221951 tttagattccagctccttcacttg 39221928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 556 - 669
Target Start/End: Original strand, 39415451 - 39415564
Alignment:
Q  556 tttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctcct 655  Q
    |||||||| |||||||| ||||| |||||||  |||||||||||||||| ||||||| |||||||  ||| ||||||||||||||||||||||  |||||    
T  39415451 tttgactccaactcctttacttgtctttcaaattgcttctttttagattccagctccctcacttggcttttaaattctctctcttttgattcacactcct 39415550  T
Q  656 tcactcggccttca 669  Q
    ||||| | ||||||    
T  39415551 tcacttgaccttca 39415564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 39192234 - 39192325
Alignment:
Q  22 gaaaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaa 113  Q
    ||||||||||||| ||||| |||||| |||||| ||| ||||||||||||||||||||| || |||||||||||||||||||| ||| ||||    
T  39192234 gaaaactggaaaatcttttcaaattgactaatacatagaacattaacatgattaaaaatgtttttaaagaattaagtagatcatgttataaa 39192325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 39390532 - 39390627
Alignment:
Q  574 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    |||||||||||||  |||||| ||||||||| ||| ||||||| |||   ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39390532 acttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttca 39390627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 451
Target Start/End: Original strand, 39397891 - 39398008
Alignment:
Q  334 agctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtccttcaaattgcttctcttttgatttaaagtcctcgacttggc 433  Q
    ||||||| ||||||| ||||||||| |||||||  |||||||||||| ||||| ||| |||||| |||||| ||||||||||| || ||||| |||||||    
T  39397891 agctcctgcacctttactttgaactgattctcttttgactcaagttttttccaccgttcttcaatttgcttatcttttgatttgaaatcctcaacttggc 39397990  T
Q  434 tttcgaaatgcttctttt 451  Q
    |||| || ||||| ||||    
T  39397991 tttcaaagtgcttatttt 39398008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 498 - 586
Target Start/End: Original strand, 39389868 - 39389956
Alignment:
Q  498 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaa 586  Q
    ||||||| || |||| ||||||||||||||| | ||||||| || |||||||||||||||||||||||||||||| ||||||| |||||    
T  39389868 ttcaaatcccctctcttttgattcaaactccatcattttgcctacaagttggttatcttttgactctaactccttcacttggccttcaa 39389956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 321 - 456
Target Start/End: Complemental strand, 39137896 - 39137761
Alignment:
Q  321 ttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtccttcaaattgcttctcttttgatttaaag 420  Q
    ||||||||| |||||||| || |||  | |||||||||||||||||  |||||| ||||  ||||| ||| |||||| ||||||||||||||||||  |     
T  39137896 ttcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttttgatttgtaa 39137797  T
Q  421 tcctcgacttggctttcgaaatgcttcttttttgat 456  Q
    ||||||||||||||||| |  ||||||| |||||||    
T  39137796 tcctcgacttggctttcaagttgcttctcttttgat 39137761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 39197914 - 39198005
Alignment:
Q  22 gaaaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaa 113  Q
    |||||| |||||| ||||| |||||| |||||| ||| ||||||||||||||||||||| || |||||||||||||||||||| ||| ||||    
T  39197914 gaaaacgggaaaatcttttcaaattgactaatacatagaacattaacatgattaaaaatgtttttaaagaattaagtagatcatgttataaa 39198005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 574 - 669
Target Start/End: Original strand, 39390322 - 39390417
Alignment:
Q  574 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    |||||||||||||  |||||| ||||||||| ||| ||||||| |||   |||||||||||||||||||||| |||||||||||||||||| ||||    
T  39390322 acttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgatccatgctccttcactcggctttca 39390417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 39215813 - 39215721
Alignment:
Q  193 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgac 288  Q
    |||||||||| ||||||  |||| | ||||||||||| |||||||||||||||||||||||||| | |||||   |||||||||||||||||||||    
T  39215813 taagaggaaccgttgtattgaaactctttcaataaactagatgaataagaacatttacccgattgtgtttct---tcaatatattttttccttgac 39215721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 39137412 - 39137317
Alignment:
Q  574 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    ||||||||||||| ||||||| |||||||||  || ||| ||| || || ||||||||||||| ||||||||||||||||| |||| |||||||||    
T  39137412 acttggctttcaaactgcttcattttagattctagatccatcattttaacttcaaattctctcacttttgattcatgctccatcacccggccttca 39137317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 296 - 447
Target Start/End: Complemental strand, 39370147 - 39369996
Alignment:
Q  296 ccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtccttc 395  Q
    |||||||||||| | |||||  ||| |||||||| | || |||||||||||   || ||||||| ||||||  | |||||||||  ||||| ||||||||    
T  39370147 ccttgacttgtcttccaaactgcttctcttttaattcgaactccttcacctgcactatgaacttgttctcttttaactcaagttctttccaccgtccttc 39370048  T
Q  396 aaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttc 447  Q
    ||||||||| ||||| ||||| |||| |||||||||| |||| || ||||||    
T  39370047 aaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttc 39369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 574 - 665
Target Start/End: Complemental strand, 39451837 - 39451746
Alignment:
Q  574 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggcc 665  Q
    |||||||||||||  |||||||||||||||| ||| ||||||||||    ||||||||||||| ||||||||||||||||| |||| |||||    
T  39451837 acttggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgattcatgctccatcacccggcc 39451746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 292 - 455
Target Start/End: Complemental strand, 39459295 - 39459132
Alignment:
Q  292 ggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtc 391  Q
    |||||||||||||||||||||||   ||| |||||||| |||||||| |||||   | ||||||||||||||||| | |  || | ||  ||||   ||     
T  39459295 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcatcgaattctttccgctgtt 39459196  T
Q  392 cttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttga 455  Q
    |||||||||||||||||||| |||| |||||||| |  |||||||| || ||||||||||||||    
T  39459195 cttcaaattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttttga 39459132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 295 - 466
Target Start/End: Complemental strand, 39468379 - 39468208
Alignment:
Q  295 tccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcctt 394  Q
    ||||||||||||||||||| |  ||| |||||||| |||| ||||||||||||| ||||||||  |||||||  |||||  | ||  || || ||| | |    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcat 39468280  T
Q  395 caaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgatgcgagttcct 466  Q
    |||||||||| ||||||||||| || ||||| ||||| || || ||||  |||||||||||| |||| ||||    
T  39468279 caaattgcttatcttttgatttgaaatcctcaacttgactgtcaaaatatttcttttttgattcgagctcct 39468208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 572
Target Start/End: Original strand, 39390708 - 39390782
Alignment:
Q  498 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactcctt 572  Q
    ||||||||||||||| ||||||||||||||||||| ||||| || || || ||||||||||||||| ||||||||    
T  39390708 ttcaaattccttctcttttgattcaaactcctttactttgcctacaaatttgttatcttttgactcaaactcctt 39390782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 600
Target Start/End: Complemental strand, 39602901 - 39602799
Alignment:
Q  498 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 597  Q
    ||||||||||||||  ||||||||||||||||||| || ||||| ||||||||||||| ||||||||||| | || | |||| ||||||  |||| ||||    
T  39602901 ttcaaattccttctgttttgattcaaactcctttacttggcatacaagttggttatctattgactctaacacattcaattggttttcaaagtgctccttt 39602802  T
Q  598 tta 600  Q
    |||    
T  39602801 tta 39602799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 577 - 658
Target Start/End: Complemental strand, 39603074 - 39602993
Alignment:
Q  577 tggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttca 658  Q
    ||||||||||  |||||||||||||||| ||||||| |||||||   |||||| ||||| ||||||||||||||||||||||    
T  39603074 tggctttcaaaatgcttctttttagattccagctccgtcacttggccttcaaactctctttcttttgattcatgctccttca 39602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 589 - 700
Target Start/End: Complemental strand, 39222421 - 39222310
Alignment:
Q  589 tgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagatt 688  Q
    ||||||||||| |||| ||| ||||||| |||   ||| ||| ||||||||||||||| ||||||||||||| |||||||||  |  | ||||||||| |    
T  39222421 tgcttctttttggattccagttccttcagttggccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctctttagact 39222322  T
Q  689 caaactccttca 700  Q
    ||||||||||||    
T  39222321 caaactccttca 39222310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 498 - 562
Target Start/End: Original strand, 39389469 - 39389533
Alignment:
Q  498 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgact 562  Q
    |||||||||||| || |||| |||||||| ||||||||||| |||||||| ||||||||||||||    
T  39389469 ttcaaattccttttcttttgtttcaaacttctttattttgcctataagttcgttatcttttgact 39389533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 416
Target Start/End: Original strand, 39414774 - 39414906
Alignment:
Q  284 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttatt 383  Q
    ||||| |||||||||| |||||||||||||||   || || ||||| |||||||| || |||  |  |||||||||||||||   || ||  ||||  ||    
T  39414774 ttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctctttgaccagtagtttgaacttattctcatttgtcttgagttcttt 39414873  T
Q  384 ccatcgtccttcaaattgcttctcttttgattt 416  Q
    ||||||| |||||||||||||||||||||||||    
T  39414874 ccatcgttcttcaaattgcttctcttttgattt 39414906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 456
Target Start/End: Complemental strand, 39137782 - 39137719
Alignment:
Q  393 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgat 456  Q
    ||||| |||||||||||||||||| || ||||| |||||| ||||||| |||||||||||||||    
T  39137782 ttcaagttgcttctcttttgatttgaaatcctcaacttggttttcgaattgcttcttttttgat 39137719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 670
Target Start/End: Original strand, 39473898 - 39473977
Alignment:
Q  591 cttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaa 670  Q
    ||||||||||||||  ||| ||||||| ||  ||||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  39473898 cttctttttagattctagccccttcacctggctttcaaattctctctgttttgatttatgctcctccactcggccatcaa 39473977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 572
Target Start/End: Complemental strand, 39221504 - 39221430
Alignment:
Q  498 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactcctt 572  Q
    ||||||||||||||| ||||||||||||| ||||| ||||| || ||||| |||||||||  ||||||| |||||    
T  39221504 ttcaaattccttctcttttgattcaaacttctttactttgcctacaagttcgttatctttcaactctaattcctt 39221430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 589 - 655
Target Start/End: Original strand, 39389707 - 39389773
Alignment:
Q  589 tgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctcct 655  Q
    |||||||||||||||| |||||||||| |||||  |||||||||  |||| ||||||||||||||||    
T  39389707 tgcttctttttagattccagctccttcgcttgaccttcaaattccttctcctttgattcatgctcct 39389773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 702
Target Start/End: Original strand, 39192590 - 39192703
Alignment:
Q  589 tgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagatt 688  Q
    ||||||||| ||||||  || |||||||||||   ||| ||||||||||||||||||||| ||||||||||| || |||||   |  | |||||| || |    
T  39192590 tgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgact 39192689  T
Q  689 caaactccttcact 702  Q
    ||||||||||||||    
T  39192690 caaactccttcact 39192703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 702
Target Start/End: Original strand, 39198270 - 39198383
Alignment:
Q  589 tgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagatt 688  Q
    ||||||||| ||||||  || |||||||||||   ||| ||||||||||||||||||||| ||||||||||| || |||||   |  | |||||| || |    
T  39198270 tgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgact 39198369  T
Q  689 caaactccttcact 702  Q
    ||||||||||||||    
T  39198370 caaactccttcact 39198383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 39421677 - 39421754
Alignment:
Q  200 aacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatt 277  Q
    |||||||| || |||| | ||||||||||  ||||||||||||||||||||| ||||| ||||| ||||||| |||||    
T  39421677 aacagttgaaatgaaactctttcaataaattagatgaataagaacatttaccagattcattttcctcatcaaaatatt 39421754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 425
Target Start/End: Original strand, 39473409 - 39473542
Alignment:
Q  292 ggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtc 391  Q
    ||||||| ||||| |||||||| |  ||| |||||||| |||||   ||||||   | |||||||||||||||||  |||||| ||||  |||||||||     
T  39473409 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactagtactttgaacttattctcttttgactcgagttctttccatcgtt 39473508  T
Q  392 cttcaaattgcttctcttttgatttaaagtcctc 425  Q
    |||||||||||||| || ||||||| || |||||    
T  39473509 cttcaaattgcttcgctattgatttgaattcctc 39473542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 658
Target Start/End: Complemental strand, 38793082 - 38792998
Alignment:
Q  574 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttca 658  Q
    |||||||| ||||  |||||||| |||||||  |||||||||||||||  ||||||||||| ||  ||||| |||||||||||||    
T  38793082 acttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttca 38792998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 669
Target Start/End: Complemental strand, 38793332 - 38793240
Alignment:
Q  577 tggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    ||||||||||  ||| |||||||||| | |||||||| ||||| |  ||||||||||||  ||||| |||||||||||||||| || ||||||    
T  38793332 tggctttcaaaatgcatctttttagactccagctcctccactttaccttcaaattctctagcttttaattcatgctccttcacccgaccttca 38793240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 39381509 - 39381585
Alignment:
Q  290 caggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 366  Q
    ||||||||||| |||||| |||||||  ||| |||||||| |||||||| |||| |||| ||||||||| |||||||    
T  39381509 caggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactcattctct 39381585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 651 - 723
Target Start/End: Complemental strand, 39458978 - 39458906
Alignment:
Q  651 ctccttcactcggccttcaaagtcatcctctttagattcaaactccttcactcggccataaaatttcttctct 723  Q
    ||||||||| ||||||||||| ||||||||||| ||||||| ||||||  |||| |||| || ||||||||||    
T  39458978 ctccttcacccggccttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaattttcttctct 39458906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 39473285 - 39473333
Alignment:
Q  231 agatgaataagaacatttacccgattctttttcttcatcaatatatttt 279  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  39473285 agatgaataagaacatttacccgattctatttcctcatcaaaatatttt 39473333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 553 - 616
Target Start/End: Original strand, 39192680 - 39192743
Alignment:
Q  553 tcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttca 616  Q
    ||||||||||| |||||||| ||||||| |||||   ||||||||||||||| |||||||||||    
T  39192680 tcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttca 39192743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 553 - 616
Target Start/End: Original strand, 39198360 - 39198423
Alignment:
Q  553 tcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttca 616  Q
    ||||||||||| |||||||| ||||||| |||||   ||||||||||||||| |||||||||||    
T  39198360 tcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttca 39198423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 292 - 423
Target Start/End: Original strand, 39421832 - 39421963
Alignment:
Q  292 ggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtc 391  Q
    |||||||||||| || || |||| | ||| |||||||| |||||||| |||||   | |||||||||||||||||  |||||  ||||  |||||| ||     
T  39421832 ggatccttgactagtgctccaaatcgcttgtcttttaatttgagctctttcactagtactttgaacttattctcttttgacttgagttctttccattgtt 39421931  T
Q  392 cttcaaattgcttctcttttgatttaaagtcc 423  Q
    ||||||||| |||||| ||| |||| ||||||    
T  39421932 cttcaaatttcttctcgtttaatttgaagtcc 39421963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 635 - 701
Target Start/End: Complemental strand, 39221229 - 39221163
Alignment:
Q  635 tctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagattcaaactccttcac 701  Q
    |||| ||||||||||||||||||| ||| |||||||| || | || ||| |||||||||||||||||    
T  39221229 tctcctttgattcatgctccttcaatcgaccttcaaattccttctgttttgattcaaactccttcac 39221163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #56
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 466
Target Start/End: Original strand, 44895631 - 44895697
Alignment:
Q  400 tgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgatgcgagttcct 466  Q
    ||||||||||||||||| ||| |||| ||||||||||| ||| ||||||||| |||| |||| ||||    
T  44895631 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctcct 44895697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #57
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 669
Target Start/End: Complemental strand, 39221756 - 39221711
Alignment:
Q  624 ttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    |||||||||||||||||||||| ||||||||||||| | |||||||    
T  39221756 ttcaaattctctctcttttgatccatgctccttcacccagccttca 39221711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #58
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 39468488 - 39468447
Alignment:
Q  216 ttttttcaataaacaagatgaataagaacatttacccgattc 257  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  39468488 ttttttcaataaactagatgaataagaacatttaccagattc 39468447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #59
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 39138045 - 39137997
Alignment:
Q  223 aataaacaagatgaataagaacatttacccgattctttttcttcatcaa 271  Q
    ||||||| ||||||||||||||  ||||||||||||||||| |||||||    
T  39138045 aataaactagatgaataagaactcttacccgattctttttcctcatcaa 39137997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #60
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 39162132 - 39162049
Alignment:
Q  22 gaaaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcagg 106  Q
    |||| |||||||||||||| |||| | |||| | ||||||||||||||||| ||||||  |  ||||| ||||||||||||||||    
T  39162132 gaaatctggaaaagcttttcaaat-gactaagacatacaacattaacatgagtaaaaacgtgtttaaaaaattaagtagatcagg 39162049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #61
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 39207062 - 39207145
Alignment:
Q  22 gaaaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcagg 106  Q
    |||| |||||||||||||| |||| | |||| | ||||||||||||||||| ||||||  |  ||||| ||||||||||||||||    
T  39207062 gaaatctggaaaagcttttcaaat-gactaagacatacaacattaacatgagtaaaaacgtgtttaaaaaattaagtagatcagg 39207145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #62
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 39381276 - 39381324
Alignment:
Q  56 atacaacattaacatgattaaaaatattcttaaagaattaagtagatca 104  Q
    |||||||||||||| ||||||||||||| |||| |||||| ||||||||    
T  39381276 atacaacattaacacgattaaaaatatttttaatgaattatgtagatca 39381324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #63
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 669
Target Start/End: Complemental strand, 38792531 - 38792476
Alignment:
Q  614 tcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    ||||||||  |||||||||||||  ||||||||||||||||||||| || ||||||    
T  38792531 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttca 38792476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #64
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 709
Target Start/End: Complemental strand, 39152320 - 39152273
Alignment:
Q  662 ggccttcaaagtcatcctctttagattcaaactccttcactcggccat 709  Q
    |||||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  39152320 ggccttcaaattcatcctcttttgattcaaaccccttcactcgtccat 39152273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #65
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 456
Target Start/End: Complemental strand, 39152526 - 39152463
Alignment:
Q  393 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgat 456  Q
    |||||||||||||||||||| ||| |||||||| || ||| |||| || | |||||||||||||    
T  39152526 ttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgat 39152463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #66
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 646
Target Start/End: Complemental strand, 39222341 - 39222238
Alignment:
Q  543 aagttggttatcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctctttt 642  Q
    |||||| || ||||| ||||| |||||||| | ||||||||| |  |||||| ||||||||| ||||| |||| | ||   ||||||||| |||||||||    
T  39222341 aagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctctttt 39222242  T
Q  643 gatt 646  Q
    ||||    
T  39222241 gatt 39222238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #67
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 39381368 - 39381435
Alignment:
Q  212 gaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttt 279  Q
    |||||| ||||| ||||| | ||||||||||||||||||| |||||||  || || ||||||||||||    
T  39381368 gaaattctttcagtaaactatatgaataagaacatttaccagattcttgctcctcgtcaatatatttt 39381435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #68
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 586
Target Start/End: Original strand, 39398184 - 39398227
Alignment:
Q  543 aagttggttatcttttgactctaactccttaacttggctttcaa 586  Q
    ||||||||| |||||||||||||||||||| | |||||||||||    
T  39398184 aagttggttctcttttgactctaactccttcaattggctttcaa 39398227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #69
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 664
Target Start/End: Complemental strand, 39458686 - 39458587
Alignment:
Q  565 aactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggc 664  Q
    |||||||  |||||||||||||    |||||||| ||||| |||||||||||| ||   |||||| ||||||| |||||| ||| ||||||||| |||||    
T  39458686 aactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggc 39458587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #70
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 39370285 - 39370243
Alignment:
Q  221 tcaataaacaagatgaataagaacatttacccgattctttttc 263  Q
    ||||||||| |||||||||||||||||||||| | ||||||||    
T  39370285 tcaataaactagatgaataagaacatttacccaaatctttttc 39370243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #71
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 39388887 - 39388969
Alignment:
Q  22 gaaaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatca 104  Q
    |||| |||||||||| ||| |||||| |||  | ||||||||||||||||||||||||  ||  ||  |||||||||||||||    
T  39388887 gaaatctggaaaagcatttcaaattgactatgacatacaacattaacatgattaaaaacgtttctatggaattaagtagatca 39388969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #72
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 39458531 - 39458469
Alignment:
Q  393 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttga 455  Q
    |||||||| |||||||||||||| ||| ||||  ||||| ||||| |||||||||| ||||||    
T  39458531 ttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttga 39458469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #73
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 39152755 - 39152694
Alignment:
Q  218 ttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttt 279  Q
    |||||||||||| |||  ||||| |||||||||| |||||| |||| ||||||| |||||||    
T  39152755 ttttcaataaactagacaaataaaaacatttacctgattctatttcctcatcaaaatatttt 39152694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #74
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 39215882 - 39215829
Alignment:
Q  60 aacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaa 113  Q
    |||||||||||||||||||||||| ||||| || || ||||||| |||| ||||    
T  39215882 aacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaa 39215829  T

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Target: chr2; HSP #75
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 466
Target Start/End: Complemental strand, 39222466 - 39222397
Alignment:
Q  397 aattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgatgcgagttcct 466  Q
    |||||| ||||||||||||| || ||||| |||||  |||| |||||||||||||| ||| | |||||||    
T  39222466 aattgcctctcttttgatttgaactcctccacttgattttcaaaatgcttctttttggattccagttcct 39222397  T

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Target: chr2; HSP #76
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 39370417 - 39370332
Alignment:
Q  28 tggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaa 113  Q
    ||||||||||||| |||||| | || | ||||||||||||||||||||| ||| || ||| |||| ||  |||||| |||| ||||    
T  39370417 tggaaaagctttttaaattgaccaagacatacaacattaacatgattaagaatgtttttatagaactatatagatcgggttataaa 39370332  T

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Target: chr2; HSP #77
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 452
Target Start/End: Complemental strand, 39451865 - 39451812
Alignment:
Q  399 ttgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttt 452  Q
    |||| ||||||||||||| |  ||||| ||||||||||| ||||||||||||||    
T  39451865 ttgcctctcttttgatttgagctcctccacttggctttcaaaatgcttcttttt 39451812  T

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Target: chr2; HSP #78
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 39459432 - 39459379
Alignment:
Q  218 ttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaa 271  Q
    |||||||||| | | ||||||||||||| |||||||||||| |||| |||||||    
T  39459432 ttttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaa 39459379  T

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Target: chr2; HSP #79
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 616
Target Start/End: Complemental strand, 39468047 - 39467974
Alignment:
Q  543 aagttggttatcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttca 616  Q
    ||||||||| ||||||||||| |||||||| | |||||||| ||  ||||  |||||| ||| |||||||||||    
T  39468047 aagttggttctcttttgactccaactccttcaattggctttgaatgtgctgttttttaaattccagctccttca 39467974  T

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Target: chr2; HSP #80
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 723
Target Start/End: Original strand, 39487829 - 39487902
Alignment:
Q  650 gctccttcactcggccttcaaagtcatcctctttagattcaaactccttcactcggccataaaatttcttctct 723  Q
    |||||||||| ||||||||||| |||||||||||  | |  |||||||||| |||||||| || || |||||||    
T  39487829 gctccttcacccggccttcaaattcatcctcttttaactttaactccttcattcggccatcaagttgcttctct 39487902  T

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Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 284 - 530
Target Start/End: Complemental strand, 33561065 - 33560819
Alignment:
Q  284 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttatt 383  Q
    |||||| |||||||||| ||||||||||| ||  |||| |||||||| ||||||||||||||||| | | |||||| | ||||   ||||| |||| |||    
T  33561065 ttgacataggatccttgccttgtccttcacactgctttacttttaagctgagctccttcaccttttcatcgaacttgtactctttcgactccagttcatt 33560966  T
Q  384 ccatcgtccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgatgcgagttcctcctcctttgattttatg 483  Q
    ||||||| | | |||||| |||| ||||||||| |||||||| ||||| ||| | |||||||||| ||||||| ||||||| ||||||||| |||| |||    
T  33560965 ccatcgtacctgaaattggttctgttttgatttgaagtcctcaacttgtcttgcaaaatgcttctcttttgattcgagttcttcctcctttaatttaatg 33560866  T
Q  484 tccctcacttgttcttcaaattccttctcctttgattcaaactcctt 530  Q
    ||| ||||||||||||| ||||||| ||| ||||||| |||||||||    
T  33560865 tccttcacttgttcttcgaattcctcctcttttgattgaaactcctt 33560819  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 497 - 617
Target Start/End: Complemental strand, 33560642 - 33560522
Alignment:
Q  497 cttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttctt 596  Q
    |||||||||||||||  ||| ||| ||||||||| | || || || ||||||  | ||||||||||| |||||||||||||| |||||||  || |||||    
T  33560642 cttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttcaaagtggttctt 33560543  T
Q  597 tttagattgcagctccttcac 617  Q
    |||||||| ||||||||||||    
T  33560542 tttagattccagctccttcac 33560522  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 33561196 - 33561107
Alignment:
Q  195 agaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttcct 284  Q
    ||||||||| || |||  ||||| ||||||||||| ||||||| ||||||||||||| ||||||||||| | ||||||  ||||||||||    
T  33561196 agaggaacacttataataaaattctttcaataaactagatgaagaagaacatttaccggattctttttccttatcaatgcattttttcct 33561107  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 599
Target Start/End: Complemental strand, 33560725 - 33560624
Alignment:
Q  498 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 597  Q
    |||||| |||||||| ||||||||||||  ||||| ||||| || ||||| |||||||||||| || |||||||| | ||||| |||||  | |||||||    
T  33560725 ttcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttgattccaactccttcagttggccttcaaattccttcttt 33560626  T
Q  598 tt 599  Q
    ||    
T  33560625 tt 33560624  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 33561301 - 33561225
Alignment:
Q  31 aaaagcttttaaaattgtctaatatatacaa-cattaacatgattaaaaatattcttaaagaattaagtagatcagg 106  Q
    |||||||||| |||||| | || | |||||| ||||||||||||||||||| |  |||||| |||||||||||||||    
T  33561301 aaaagcttttcaaattgaccaagacatacaaacattaacatgattaaaaatgtgtttaaaggattaagtagatcagg 33561225  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 295 - 456
Target Start/End: Complemental strand, 16113339 - 16113178
Alignment:
Q  295 tccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcctt 394  Q
    |||||||||||| |||||| |  ||| |||||||| |||||||||||| ||||| ||||||||| |||||||  ||| || ||||  ||||| ||| |||    
T  16113339 tccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctcttttgattcgagttctttccaccgttctt 16113240  T
Q  395 caaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgat 456  Q
    |||||||||| || |||||||| || | ||| ||||||||||| |||||||| |||||||||    
T  16113239 caaattgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttattttttgat 16113178  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 16113495 - 16113416
Alignment:
Q  202 cagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 281  Q
    |||||| || ||| |||||||||||||| |||||||| |||||| ||||||||||||||||| || ||||||| ||||||    
T  16113495 cagttgaaatgaatttttttcaataaactagatgaatgagaacacttacccgattctttttcctcgtcaatatgtttttt 16113416  T

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Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 574 - 669
Target Start/End: Complemental strand, 19807362 - 19807267
Alignment:
Q  574 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 669  Q
    ||||||||||||| | ||||||||||||||||| ||||| ||| |||  ||||||||||||||||||||||| ||||||||||||  |||||||||    
T  19807362 acttggctttcaaacagcttctttttagattgctgctccatcatttggctttcaaattctctctcttttgatgcatgctccttcatccggccttca 19807267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 321 - 456
Target Start/End: Complemental strand, 19807846 - 19807711
Alignment:
Q  321 ttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtccttcaaattgcttctcttttgatttaaag 420  Q
    ||||||||| |||||||| || |||  | |||||||||||||||||  |||||| ||||  ||||| | | |||||| ||| ||||||||||||||  |     
T  19807846 ttcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtat 19807747  T
Q  421 tcctcgacttggctttcgaaatgcttcttttttgat 456  Q
    ||||||||||||||||| |  ||||||| |||||||    
T  19807746 tcctcgacttggctttcaagttgcttctcttttgat 19807711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 19807732 - 19807672
Alignment:
Q  393 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttctttttt 453  Q
    ||||| |||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||    
T  19807732 ttcaagttgcttctcttttgatttgaagtcctcaacttggttttcgaattgcttctttttt 19807672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 620
Target Start/End: Complemental strand, 19807257 - 19807190
Alignment:
Q  553 tcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttg 620  Q
    ||||||||||| | |||||| | | || |||||| |||| |||||||||||| |||||||||||||||    
T  19807257 tcttttgactcaagctccttgattcggttttcaaactgcctctttttagattccagctccttcacttg 19807190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 19807994 - 19807947
Alignment:
Q  224 ataaacaagatgaataagaacatttacccgattctttttcttcatcaa 271  Q
    |||||| |||||||||||||| |||||||||| ||||||| |||||||    
T  19807994 ataaactagatgaataagaacttttacccgatgctttttcctcatcaa 19807947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 670
Target Start/End: Complemental strand, 19807087 - 19807014
Alignment:
Q  597 tttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaa 670  Q
    |||||||| |||||| |||||| |   ||||||||||   |||| ||||||||||||||||| |||||||||||    
T  19807087 tttagattccagctcattcactcggccttcaaattcttgttcttctgattcatgctccttcaatcggccttcaa 19807014  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 456
Target Start/End: Complemental strand, 51575014 - 51574946
Alignment:
Q  388 cgtccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgat 456  Q
    |||||||||||||| |||||||||||||| |  ||||  ||||||||||| ||||||||||||| ||||    
T  51575014 cgtccttcaaattgtttctcttttgatttgagttccttcacttggctttcaaaatgcttcttttctgat 51574946  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 704
Target Start/End: Complemental strand, 51575235 - 51575181
Alignment:
Q  650 gctccttcactcggccttcaaagtcatcctctttagattcaaactccttcactcg 704  Q
    |||||||||| ||| |||||||||   ||||||| ||||||||||||||||||||    
T  51575235 gctccttcacccggtcttcaaagttcacctcttttgattcaaactccttcactcg 51575181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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