View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2006_high_5 (Length: 240)
Name: NF2006_high_5
Description: NF2006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2006_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23992385 - 23992606
Alignment:
| Q |
1 |
aaaagggaaggacgcaaaactcctcaaggattgaaatccaagagnnnnnnngttctctctcacctgggcccgcaaaccacaaaccttggcccattaacaa |
100 |
Q |
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| T |
23992385 |
aaaagggaagcacgcaaaactcctcaaggattgaaatccaagagaaaaaaagttctctctcacctgggcccgcaaaccacaaaccttggcccattaacaa |
23992484 |
T |
|
| Q |
101 |
tagttatatatagcatcgatagagttgcatgcgttagggtttttctgtttcagatttgagttcacattgatagagttgcatgagttagggtttattcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23992485 |
tagttatatatagcatcgatagagttgcatgcgttagggtttttctgtttcagatttgagttcacattgatagagttgcatgagttagggtttattcaac |
23992584 |
T |
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| Q |
201 |
ttcaacacactatactataatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
23992585 |
ttcaacacactatactataatg |
23992606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 24000868 - 24000919
Alignment:
| Q |
57 |
ctctcacctgggcccgcaaaccacaaaccttggcccattaacaatagttata |
108 |
Q |
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||||||||||||||||||| || |||||||||||||| |||||||||||| |
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| T |
24000868 |
ctctcacctgggcccgcaatccttcaaccttggcccatttacaatagttata |
24000919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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