View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2006_low_3 (Length: 410)

Name: NF2006_low_3
Description: NF2006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2006_low_3
NF2006_low_3
[»] chr8 (5 HSPs)
chr8 (274-402)||(14697861-14697990)
chr8 (24-110)||(14698160-14698246)
chr8 (23-110)||(24528866-24528953)
chr8 (27-69)||(24375842-24375884)
chr8 (27-110)||(9235414-9235498)
[»] chr6 (2 HSPs)
chr6 (29-109)||(9044528-9044608)
chr6 (27-109)||(25166981-25167064)
[»] chr3 (8 HSPs)
chr3 (27-110)||(25124921-25125004)
chr3 (28-110)||(17030656-17030738)
chr3 (28-108)||(43426334-43426415)
chr3 (59-112)||(45007988-45008041)
chr3 (28-72)||(7272694-7272738)
chr3 (30-89)||(55257796-55257856)
chr3 (16-69)||(30226238-30226291)
chr3 (62-110)||(25158916-25158964)
[»] chr4 (3 HSPs)
chr4 (28-110)||(8810006-8810088)
chr4 (27-110)||(42161343-42161427)
chr4 (27-87)||(13555754-13555814)
[»] chr1 (4 HSPs)
chr1 (31-106)||(22315288-22315362)
chr1 (27-110)||(25059954-25060037)
chr1 (30-72)||(14909957-14909999)
chr1 (23-59)||(31883639-31883675)
[»] chr5 (4 HSPs)
chr5 (16-112)||(21144101-21144197)
chr5 (16-106)||(37869442-37869532)
chr5 (61-110)||(42778932-42778981)
chr5 (18-72)||(34309497-34309551)
[»] chr2 (4 HSPs)
chr2 (35-110)||(41906118-41906193)
chr2 (30-72)||(26498709-26498751)
chr2 (23-72)||(35791130-35791179)
chr2 (28-72)||(31377684-31377728)
[»] scaffold0004 (1 HSPs)
scaffold0004 (28-110)||(82275-82357)
[»] chr7 (5 HSPs)
chr7 (35-112)||(43393833-43393911)
chr7 (53-110)||(1853229-1853285)
chr7 (27-87)||(9689377-9689437)
chr7 (28-72)||(27082684-27082728)
chr7 (28-72)||(27195573-27195617)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 274 - 402
Target Start/End: Complemental strand, 14697990 - 14697861
Alignment:
Q  274 taacgatgtgctttttattttagtcaaaatatttatag-atactatagacctctgaatccgtcagaccatcaacatatggtcatggtatacagtatacac 372  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14697990 taacggtgttctttttattttagtcaaaatatttatagtatactatagacctctgaatccgtcagaccatcaacatatggtcatggtatacagtatacac 14697891  T
Q  373 tgattaatatcacagagtcaaattcatttc 402  Q
    ||||||||||||||||||||||||||||||    
T  14697890 tgattaatatcacagagtcaaattcatttc 14697861  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 14698246 - 14698160
Alignment:
Q  24 cctttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  14698246 cctttgtaatttgagaaaatttcagtttgccccctgccatatcatcgatatttcaggttaccccttgccatatcattgattttgtac 14698160  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 24528953 - 24528866
Alignment:
Q  23 ccctttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    ||||||||||||| ||| ||| |  |||| |||||| |||||||||||||||||||| ||||||| | | ||||||| ||||||||||    
T  24528953 ccctttgtaattttagagaatctcggtttaccccctaccatatcatcgatatttcagtttaccccctgtaatatcatcgattttgtac 24528866  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 24375842 - 24375884
Alignment:
Q  27 ttgtaatttgagaaaattttagtttgccccctgccatatcatc 69  Q
    |||||||||||| |||||| ||||| |||||||||||||||||    
T  24375842 ttgtaatttgagcaaatttcagtttaccccctgccatatcatc 24375884  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 9235498 - 9235414
Alignment:
Q  27 ttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttacc-ccttttcatatcattgattttgtac 110  Q
    ||||||||||| | |||||| ||||  ||| || ||||||||||||||||| | ||||| || | ||||||||| ||||||||||    
T  9235498 ttgtaatttgaaagaattttggtttaacccttgacatatcatcgatatttcggtttaccaccctgtcatatcatcgattttgtac 9235414  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 9044608 - 9044528
Alignment:
Q  29 gtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgta 109  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||||  |||||||| |||||||||    
T  9044608 gtaatttgagagaattttggtttaccccctgccatatcatcgatatttcagtttaccccttgccatatcatcgattttgta 9044528  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 25167064 - 25166981
Alignment:
Q  27 ttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggtta-ccccttttcatatcattgattttgta 109  Q
    ||||||||||||| |||||  |||| || || ||||||  ||||||||||||| ||| |||||| ||||||||| |||||||||    
T  25167064 ttgtaatttgagagaatttcggtttacctcccgccataggatcgatatttcagtttacccccttgtcatatcatcgattttgta 25166981  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 25124921 - 25125004
Alignment:
Q  27 ttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||    
T  25124921 ttgtaatttgggagaatttcagtttaccccctgccatatcatcgatatttcagtttacccccttccatatcatcgattttgtac 25125004  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 17030738 - 17030656
Alignment:
Q  28 tgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    ||||| |||||| |||||| |||| || |||||||||||||||||||||||||||||| | |  |||||||||||||||||||    
T  17030738 tgtaaattgagagaattttggtttacctcctgccatatcatcgatatttcaggttaccacctgacatatcattgattttgtac 17030656  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 43426415 - 43426334
Alignment:
Q  28 tgtaatttgagaaaattttagtttgccccc-tgccatatcatcgatatttcaggttaccccttttcatatcattgattttgt 108  Q
    |||||||||||| |||||  |||| ||||| |||||||||||||||||||||| |||| ||||  || ||||| ||||||||    
T  43426415 tgtaatttgagagaatttcggtttacccccctgccatatcatcgatatttcagtttactccttgccacatcatcgattttgt 43426334  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 45008041 - 45007988
Alignment:
Q  59 gccatatcatcgatatttcaggttaccccttttcatatcattgattttgtacgg 112  Q
    ||||||||||||||||||||||||||||| |  || ||| ||||||||||||||    
T  45008041 gccatatcatcgatatttcaggttaccccctgccaaatcgttgattttgtacgg 45007988  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 7272738 - 7272694
Alignment:
Q  28 tgtaatttgagaaaattttagtttgccccctgccatatcatcgat 72  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||    
T  7272738 tgtaatttgaggaaatttcagtttaccccctgccatatcatcgat 7272694  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 55257796 - 55257856
Alignment:
Q  30 taatttgagaaaattttagtttgc-cccctgccatatcatcgatatttcaggttacccctt 89  Q
    |||||||| | ||||| ||||| | |||||||||||||||||||||||||| |||||||||    
T  55257796 taatttgatagaatttcagtttacacccctgccatatcatcgatatttcagtttacccctt 55257856  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 30226291 - 30226238
Alignment:
Q  16 acttttaccctttgtaatttgagaaaattttagtttgccccctgccatatcatc 69  Q
    ||||| |||| ||||| |||||| |||||||||||| ||||||| |||||||||    
T  30226291 actttcaccccttgtagtttgagcaaattttagtttaccccctgtcatatcatc 30226238  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 25158964 - 25158916
Alignment:
Q  62 atatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    ||||||||||||||| || |||||||||  |||||||| ||||||||||    
T  25158964 atatcatcgatattttagtttaccccttgccatatcatcgattttgtac 25158916  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 8810088 - 8810006
Alignment:
Q  28 tgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    ||||||||||||||||||  |||| ||||||  ||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  8810088 tgtaatttgagaaaatttcggtttaccccctatcatgtcatcgatatttcaggttaccccctgtcatatcattgattttgtac 8810006  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 42161427 - 42161343
Alignment:
Q  27 ttgtaatttgagaaaattttagtttgccc-cctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    ||||||||||||| |||||   ||| ||| |||||||||||||||||||||||| ||||||  | |||||||||  |||||||||    
T  42161427 ttgtaatttgagagaatttcgatttaccctcctgccatatcatcgatatttcagtttaccctctgtcatatcatcaattttgtac 42161343  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 13555754 - 13555814
Alignment:
Q  27 ttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttacccc 87  Q
    ||||||||||||| |||||  |||| |||||| |||||||||| ||||||| | |||||||    
T  13555754 ttgtaatttgagagaatttcggtttaccccctaccatatcatcaatatttcggtttacccc 13555814  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 22315288 - 22315362
Alignment:
Q  31 aatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgatttt 106  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||| | ||||||||||||||||    
T  22315288 aatttgagaaaatttcagtttacccccttccatatcatcgatatttcagggtacccc-tgtcatatcattgatttt 22315362  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 25059954 - 25060037
Alignment:
Q  27 ttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    |||||||||||||  ||||  |||| ||||||| ||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  25059954 ttgtaatttgagagcatttcggtttaccccctgtcatatcatcgatatttcaggttaccccctgccatatcattgattttgtac 25060037  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 14909957 - 14909999
Alignment:
Q  30 taatttgagaaaattttagtttgccccctgccatatcatcgat 72  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  14909957 taatttgagaaaatttcagtttaccccctgccatatcatcgat 14909999  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 31883675 - 31883639
Alignment:
Q  23 ccctttgtaatttgagaaaattttagtttgccccctg 59  Q
    |||||||||||||||||||||||| |||| |||||||    
T  31883675 ccctttgtaatttgagaaaattttggtttaccccctg 31883639  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 21144101 - 21144197
Alignment:
Q  16 acttttaccctttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtacgg 112  Q
    |||||| ||| ||||||||||||| |||||| |||| ||| ||| |||||||||||||||| || |||||||||  ||||||||  | |||||||||    
T  21144101 acttttgccccttgtaatttgagagaattttggtttaccctctgtcatatcatcgatattttagtttaccccttgccatatcatctactttgtacgg 21144197  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 37869532 - 37869442
Alignment:
Q  16 acttttaccctttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgatttt 106  Q
    |||||| ||| || |||||||||| |||||   ||| || |||||||||||||||||||||||| ||||||| |  |||||||||||||||    
T  37869532 acttttgccccttataatttgagagaatttctatttacctcctgccatatcatcgatatttcagtttaccccctcccatatcattgatttt 37869442  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 42778981 - 42778932
Alignment:
Q  61 catatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  42778981 catatcatcgatatttcaggttaccccctgccatatcattgattttgtac 42778932  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 34309497 - 34309551
Alignment:
Q  18 ttttaccctttgtaatttgagaaaattttagtttgccccctgccatatcatcgat 72  Q
    |||| |||| |||||||||||||||||||  ||| ||||||| ||||||||||||    
T  34309497 ttttgccctctgtaatttgagaaaattttgatttaccccctgtcatatcatcgat 34309551  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 41906193 - 41906118
Alignment:
Q  35 tgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    ||||| ||||| ||||| |||||||||||||||| |||||||||| ||||||| || |||||| | ||||||||||    
T  41906193 tgagagaatttcagtttaccccctgccatatcattgatatttcagtttacccccttccatatcgtcgattttgtac 41906118  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 26498709 - 26498751
Alignment:
Q  30 taatttgagaaaattttagtttgccccctgccatatcatcgat 72  Q
    ||||||||||||||||  |||| ||||||||||||||||||||    
T  26498709 taatttgagaaaatttcggtttaccccctgccatatcatcgat 26498751  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 35791179 - 35791130
Alignment:
Q  23 ccctttgtaatttgagaaaattttagtttgccccctgccatatcatcgat 72  Q
    |||||||||||||||||  ||||  |||| ||||||||||||||||||||    
T  35791179 ccctttgtaatttgagagtatttcggtttaccccctgccatatcatcgat 35791130  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 31377728 - 31377684
Alignment:
Q  28 tgtaatttgagaaaattttagtttgccccctgccatatcatcgat 72  Q
    ||||||||||| ||||||| ||||  |||||||||||||||||||    
T  31377728 tgtaatttgagcaaattttggtttaacccctgccatatcatcgat 31377684  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 82357 - 82275
Alignment:
Q  28 tgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    |||||||||||| |||||  |||| |||||||| |||||||||||||||  | ||||| ||| |||||| ||  |||||||||    
T  82357 tgtaatttgagagaatttcggtttaccccctgctatatcatcgatattttggtttacctcttgtcatattatcaattttgtac 82275  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 43393911 - 43393833
Alignment:
Q  35 tgagaaaattttagtttgccccctgccatatcatcgatatttcaggtta-ccccttttcatatcattgattttgtacgg 112  Q
    ||||| ||||| ||||| |||||||| ||| |||||||||||||| ||| |||| || |||||| | ||||||||||||    
T  43393911 tgagagaatttcagtttaccccctgctataccatcgatatttcagtttatcccccttccatatcgtcgattttgtacgg 43393833  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 1853285 - 1853229
Alignment:
Q  53 ccccctgccatatcatcgatatttcaggttaccccttttcatatcattgattttgtac 110  Q
    ||||||||| ||||||||||||||| | ||||||| | ||||||||| ||||||||||    
T  1853285 ccccctgccttatcatcgatatttc-gtttaccccctgtcatatcatcgattttgtac 1853229  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 9689377 - 9689437
Alignment:
Q  27 ttgtaatttgagaaaattttagtttgccccctgccatatcatcgatatttcaggttacccc 87  Q
    ||||||||||||| |||||  |||| |||||| |||||||||| ||||||| | |||||||    
T  9689377 ttgtaatttgagagaatttcggtttaccccctaccatatcatcaatatttcggtttacccc 9689437  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 27082684 - 27082728
Alignment:
Q  28 tgtaatttgagaaaattttagtttgccccctgccatatcatcgat 72  Q
    |||||||||||| |||||| |||| ||||||||||||| ||||||    
T  27082684 tgtaatttgagataattttggtttaccccctgccatattatcgat 27082728  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 27195617 - 27195573
Alignment:
Q  28 tgtaatttgagaaaattttagtttgccccctgccatatcatcgat 72  Q
    |||||||||||| |||||| |||| ||||||||||||| ||||||    
T  27195617 tgtaatttgagataattttggtttaccccctgccatattatcgat 27195573  T

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