View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2006_low_5 (Length: 329)
Name: NF2006_low_5
Description: NF2006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2006_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 14520592 - 14520297
Alignment:
| Q |
19 |
ggtagggctaggtggatgccaggggatgaaagggttagtaattatagttctgaagatggttcttatagcagttatgatggatcaaggagtcctatgattg |
118 |
Q |
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| T |
14520592 |
ggtagggctaggtggatgtcaggggatgaaagggttagtaattatagttctgaagatggttcttatagcagttatgatggatcaaggagtcctatgattg |
14520493 |
T |
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| Q |
119 |
atcattctgttccaagagtgccaaatttgagattaaaagctcctaagagacaaggagagactatttccaaagggcataagaattatgacctcatgcttaa |
218 |
Q |
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| T |
14520492 |
atcattctgttccaagagtgccaaatttgagattaaaagctcctaagagacaaggagagactatttccaaagggcataagaattatgacctcatgcttaa |
14520393 |
T |
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| Q |
219 |
tttgcagctaggtatcaggtacttatcatagtttttacttttgatgtgattaattctcattttttcatgtttaggaagctttctagtttaactgtg |
314 |
Q |
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| T |
14520392 |
tttgcagctaggtatcaggtacttatcatagtttttacttttgatgtgattaattctcattttttcatgtttaggaagctttctagcttaactgtg |
14520297 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 4193683 - 4193777
Alignment:
| Q |
145 |
ttgagattaaaagctcctaagagacaaggagagactatttccaaagggcataagaattatgacctcatgcttaatttgcagctaggtatcaggta |
239 |
Q |
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| T |
4193683 |
ttgagattaaaagctcctaaaagaccgggagagactatatctaaagggcataaaaactatgagcttatgttgaatcttcaactaggtatcaggta |
4193777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 11576064 - 11576010
Alignment:
| Q |
117 |
tgatcattctgttccaagagtgccaaatttgagattaaaagctcctaagagacaa |
171 |
Q |
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| T |
11576064 |
tgataattctattccaagagtgccacatttgagattaaaggctcctatgagacaa |
11576010 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 24523797 - 24523843
Alignment:
| Q |
178 |
actatttccaaagggcataagaattatgacctcatgcttaatttgca |
224 |
Q |
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| T |
24523797 |
actatttctaaagggcataagaattatgatttgatgcttaatttgca |
24523843 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 35257487 - 35257539
Alignment:
| Q |
175 |
gagactatttccaaagggcataagaattatgacctcatgcttaatttgcagct |
227 |
Q |
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|||||||| | ||||||||| || |||| ||| |||||||||||||||||||| |
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| T |
35257487 |
gagactatatgcaaagggcacaaaaattttgagctcatgcttaatttgcagct |
35257539 |
T |
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