View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2006_low_6 (Length: 247)
Name: NF2006_low_6
Description: NF2006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2006_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 17821564 - 17821330
Alignment:
| Q |
1 |
ttgggtaggcattccatacaattagagtatgaacttggtaaattaatttagatctaatacaaaagacaggagaagaatatgacttaga--aattgaagag |
98 |
Q |
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| T |
17821564 |
ttgggtaggcattccatacaattagagtatgaacttggtaaattaatttagatctaatacaaaagacaggagaagaatattacttagagaaattgaagcg |
17821465 |
T |
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| Q |
99 |
agttcaagaaaagaagacaaaatttataagtatacatgaaaatgaaatggtaattacaaaaagtggaaggttcataccaacagttgaacttttgaaggtc |
198 |
Q |
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| T |
17821464 |
agttcaagaaaagaagacaaaatttataagtatacatgaaaatgaaatggtaaatacaaaaagtggaaggttcataccaacagttgaacttttgaaggtc |
17821365 |
T |
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| Q |
199 |
gttgtcccatcgataaaatttaagtttcctgtgat |
233 |
Q |
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| T |
17821364 |
gttgtcccatcgataaaatttaagtttcctgtgat |
17821330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 17776925 - 17776863
Alignment:
| Q |
171 |
cataccaacagttgaacttttgaaggtcgttgtcccatcgataaaatttaagtttcctgtgat |
233 |
Q |
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| T |
17776925 |
cataccaacagttgcacttttgaaggtggttgttccatcgatgaaatttaagctgcctgtgat |
17776863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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