View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2006_low_8 (Length: 237)
Name: NF2006_low_8
Description: NF2006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2006_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 6582278 - 6582372
Alignment:
| Q |
143 |
tcacctttgcaaggtataagaatcttctgggacacgccttccttcctttatacagtcttcaacccaacggtggttgactacatatattttgaact |
237 |
Q |
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| T |
6582278 |
tcacctttgcaaggtataagaatcttctgggacacgccttccttcctttatacagtcttcaacccaacggtggttgactacatatatttttaact |
6582372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 6582136 - 6582239
Alignment:
| Q |
10 |
atacatacacaatcccatggtgctgtcttttttctatcaaaaggccctgataattttataaaatccaatgca-ttttgggataattatacaataattggg |
108 |
Q |
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| T |
6582136 |
atacatacacaatcccatggtgctgtcttttttctatcaaaaggccctgataattttataaaatccaatgcatttttggtataattctacaataattggg |
6582235 |
T |
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| Q |
109 |
cagc |
112 |
Q |
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|||| |
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| T |
6582236 |
cagc |
6582239 |
T |
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