View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_high_10 (Length: 464)
Name: NF20070_high_10
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 11652057 - 11651599
Alignment:
| Q |
1 |
agaaatcagggtagtgtgattctactagcaatactttataaggtaaatgatggatagatacaaatatcttggagtgggataccaacttcaatagacaaaa |
100 |
Q |
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| T |
11652057 |
agaaatcagggtagtgtgattttattagcaatactttataaagtagatgatggatagatacaaatatcttggagtgggataccaacttcaatagacaaaa |
11651958 |
T |
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| Q |
101 |
tggcataaccatgacctttatacaaaaatgcactacctccgatcactattatcaacaaagattctcttaattagatttattgaataa---atttatccaa |
197 |
Q |
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| T |
11651957 |
tggcataaccatgacctttatacaaaaatgcactacctccggtcactattatcaacaaagattctcttaattagatttattgaataattgatttatctaa |
11651858 |
T |
|
| Q |
198 |
tttata------ttcagatatatcagttattcaatgaaccttaaaatataatatttatttattatggtgatcagagggagtatttaaatacaatgcaaaa |
291 |
Q |
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| T |
11651857 |
tttatagtataattcagatatatcagttattcaatgaaccttaaaaaataatatttgtttattacgatgatcggagggagtatttaaatacaatgcaaaa |
11651758 |
T |
|
| Q |
292 |
caactctttcaaaagtaagactaaaataaaaattgtttgtttgcgactcattgtaataggaagtgattcatgtttcattatgagatcatgtttctgccgt |
391 |
Q |
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| T |
11651757 |
caactctttcaaaagtaagactaaaataaaaattgtttgtttgcgactcattgtaataggaagcgattcatgtttcattatgagatcatgtttctgccgt |
11651658 |
T |
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| Q |
392 |
agaatacaattaaaagttttaccttccttgaggttgaaaccatgtgcaacagttgaaaa |
450 |
Q |
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| T |
11651657 |
agaatacaattaaaagttttaccttccttgaggttgaaaccatgtgcaacagttgaaaa |
11651599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 39272196 - 39272253
Alignment:
| Q |
217 |
gttattcaatgaaccttaaaatataatatttatttattatggtgatcagagggagtat |
274 |
Q |
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| T |
39272196 |
gttattcaatgaatctgaaaatagaatatttacttataatagtgatcggagggagtat |
39272253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 29621000 - 29621044
Alignment:
| Q |
209 |
atatatcagttattcaatgaaccttaaaatataatatttatttat |
253 |
Q |
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| T |
29621000 |
atatataagttattcaatgaaccttaaaatgaaatatttacttat |
29621044 |
T |
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