View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20070_high_11 (Length: 412)

Name: NF20070_high_11
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20070_high_11
NF20070_high_11
[»] chr7 (13 HSPs)
chr7 (19-321)||(8410211-8410513)
chr7 (111-268)||(8361073-8361230)
chr7 (111-262)||(8443097-8443248)
chr7 (267-375)||(8361283-8361391)
chr7 (267-352)||(8411357-8411442)
chr7 (19-92)||(8411206-8411279)
chr7 (186-232)||(8411286-8411332)
chr7 (157-198)||(8350127-8350168)
chr7 (157-222)||(8369054-8369119)
chr7 (31-84)||(8436235-8436288)
chr7 (161-214)||(8436382-8436435)
chr7 (157-198)||(8480945-8480986)
chr7 (150-214)||(8527688-8527752)
[»] scaffold0060 (1 HSPs)
scaffold0060 (111-264)||(68599-68758)
[»] chr8 (1 HSPs)
chr8 (128-212)||(7763030-7763115)
[»] chr4 (1 HSPs)
chr4 (157-214)||(973068-973125)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 8410211 - 8410513
Alignment:
Q  19 gtcggtatatctgaacttccattggttagcagcaacataagtatttgagttgcaggctattcacaaattcccttatacttggaatcgtcacttattgtct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  8410211 gtcggtatatctgaacttccattggttagcagcaacataagtatttgagttgcaggctattcacaaattaccttatacttggactcgtcacttattgtct 8410310  T
Q  119 ctgtaatagcttgttcaaaaacttcaacttagaacatattcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgttagccaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8410311 ctgtaatagcttgttcaaaaacttcaacttagaacatattcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgttagccaca 8410410  T
Q  219 gcaggccaaaaagacatttttctaatttagcaaaatttaaacatttacaaataagcgaaccttacaaactagtgactaagattgaacaagtataaattga 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8410411 gcaggccaaaaagacatttttctaatttagcaaaatttaaacatttacaaataagcaaaccttacaaactagtgactaagattgaacaagtataaattga 8410510  T
Q  319 tca 321  Q
    |||    
T  8410511 tca 8410513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 8361073 - 8361230
Alignment:
Q  111 tattgtctctgtaatagcttgttcaaaaacttcaacttagaacatattcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8361073 tattgtctctgtaatagcttgttcaaaaacttcaacttagaacatattcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggctaattgt 8361172  T
Q  211 tagccacagcaggccaaaaagacatttttctaatttagcaaaatttaaacatttacaa 268  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8361173 tagccacagcaggccaaaacgacatttttctaatttagcaaaatttaaacatttacaa 8361230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 8443097 - 8443248
Alignment:
Q  111 tattgtctctgtaatagcttgttcaaaaacttcaacttagaacatattcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgt 210  Q
    ||||||||||||||||  |||||||||||||||||||| |||||| || ||||||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  8443097 tattgtctctgtaataatttgttcaaaaacttcaactttgaacatctttaattaaagcctctggtttgtgtggattgtgacaaatgcaaaggccaattgt 8443196  T
Q  211 tagccacagcaggccaaaaagacatttttctaatttagcaaaatttaaacat 262  Q
    ||| |||||||||  ||||| ||||||||||||||||| |||||||||||||    
T  8443197 tagacacagcagggaaaaaaaacatttttctaatttaggaaaatttaaacat 8443248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 8361283 - 8361391
Alignment:
Q  267 aaataagcgaaccttacaaactagtgactaagattgaacaagtataaattgatc-attatgaataagtgaaccttgcaaagctttataagtgttaatctg 365  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||| |||||||||| |||||     
T  8361283 aaataagcgaaccttaaatactagtgactaagattgaacaagtataaattgatcaattataaataattgaaccttacaaagc-ttataagtgtgaatctt 8361381  T
Q  366 actaagatag 375  Q
    ||||||||||    
T  8361382 actaagatag 8361391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 8411357 - 8411442
Alignment:
Q  267 aaataagcgaaccttacaaactagtgactaagattgaacaagtataaattgatcattatgaataagtgaaccttgcaaagctttat 352  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  8411357 aaataagtgaaccttaaaaactagtgactaagattaaacaagtataaattgatcattataaataagtgaaccttacaaagctttat 8411442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 8411206 - 8411279
Alignment:
Q  19 gtcggtatatctgaacttccattggttagcagcaacataagtatttgagttgcaggctattcacaaattccctt 92  Q
    ||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8411206 gtcggtacatatgaactgccattggttagcagcaacacaagtatttgagttgcaggctattcacaaattccctt 8411279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 8411286 - 8411332
Alignment:
Q  186 tgtgacgaatgcaaaggccaattgttagccacagcaggccaaaaaga 232  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||    
T  8411286 tgtgacaaattcaaaggccaattgttagccacagcaggccaaaaaga 8411332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 8350127 - 8350168
Alignment:
Q  157 ttcaattaaagcttctggtttgtgtggactgtgacgaatgca 198  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  8350127 ttcaattaaatcttctggtttgggtggactgtgacaaatgca 8350168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 8369054 - 8369119
Alignment:
Q  157 ttcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgttagccacagcag 222  Q
    |||||||  |||||||||||||||||| |||| || |||||| ||| || |||||||||| |||||    
T  8369054 ttcaattgcagcttctggtttgtgtggtctgtaaccaatgcataggtcatttgttagccatagcag 8369119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 8436235 - 8436288
Alignment:
Q  31 gaacttccattggttagcagcaacataagtatttgagttgcaggctattcacaa 84  Q
    ||||||||| ||||||| |||||||  ||| |||||||||||||| ||||||||    
T  8436235 gaacttccaatggttagaagcaacactagtttttgagttgcaggccattcacaa 8436288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 8436382 - 8436435
Alignment:
Q  161 attaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgttagc 214  Q
    |||||| ||||||||||| |||| ||||||| |||| ||||||||||| |||||    
T  8436382 attaaatcttctggtttgagtggtctgtgacaaatggaaaggccaatttttagc 8436435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 8480986 - 8480945
Alignment:
Q  157 ttcaattaaagcttctggtttgtgtggactgtgacgaatgca 198  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  8480986 ttcaattaaatcttctggtttgggtggactgtgacaaatgca 8480945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 8527688 - 8527752
Alignment:
Q  150 gaacatattcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgttagc 214  Q
    |||||| |||||||| |||||||||||||| ||  ||||  | |||| |||||||||||||||||    
T  8527688 gaacatgttcaattacagcttctggtttgtatgttctgtttccaatgaaaaggccaattgttagc 8527752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 111 - 264
Target Start/End: Complemental strand, 68758 - 68599
Alignment:
Q  111 tattgtctctgtaatagcttgttcaaaaacttcaacttagaacatattcaattaaagcttctggtttgtgtggactgtgac-----gaatgcaaaggcca 205  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||| ||||||      |||||||||||||    
T  68758 tattgtctctgtaataacttgttcaaaaacttcaactttgaacatctttaattaaagcctctggtttgtgtggattgtgacaaattaaatgcaaaggcca 68659  T
Q  206 attgttagccacagcaggc-caaaaagacatttttctaatttagcaaaatttaaacattt 264  Q
    |||||||| |||||  |||  ||||||||||||||||||||||| ||||||||| |||||    
T  68658 attgttagacacagtcggcaaaaaaagacatttttctaatttaggaaaatttaagcattt 68599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 7763115 - 7763030
Alignment:
Q  128 cttgttcaaaaacttcaacttagaacatattcaattaaagcttctggtttgtgtggactgtgacgaat-gcaaaggccaattgtta 212  Q
    |||||||||||||||| || |||| ||| |||| |||||| |||| |||||||||| |||| || ||| |  ||||||||||||||    
T  7763115 cttgttcaaaaacttcgacctagatcatgttcagttaaagtttcttgtttgtgtggtctgtaacaaatagtgaaggccaattgtta 7763030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 973068 - 973125
Alignment:
Q  157 ttcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgttagc 214  Q
    |||||||| |||||||||||||| ||| |||| ||  |||||||||||||| ||||||    
T  973068 ttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagc 973125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University