View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20070_high_13 (Length: 395)

Name: NF20070_high_13
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20070_high_13
NF20070_high_13
[»] chr5 (9 HSPs)
chr5 (91-379)||(29597298-29597585)
chr5 (42-379)||(29642396-29642737)
chr5 (110-379)||(29647713-29647992)
chr5 (42-280)||(29593898-29594135)
chr5 (42-241)||(29820884-29821081)
chr5 (1-42)||(29597188-29597229)
chr5 (42-74)||(29597271-29597303)
chr5 (42-118)||(28763580-28763654)
chr5 (1-38)||(29648008-29648045)
[»] chr7 (12 HSPs)
chr7 (88-249)||(19325709-19325870)
chr7 (82-183)||(12819670-12819771)
chr7 (105-176)||(19645433-19645504)
chr7 (98-170)||(22064351-22064423)
chr7 (98-170)||(22070360-22070432)
chr7 (325-375)||(660826-660876)
chr7 (338-379)||(19344567-19344608)
chr7 (105-167)||(22100751-22100813)
chr7 (127-172)||(20057832-20057877)
chr7 (98-167)||(22063900-22063969)
chr7 (124-169)||(29874827-29874872)
chr7 (122-166)||(6864583-6864627)
[»] chr6 (6 HSPs)
chr6 (48-172)||(24254115-24254237)
chr6 (42-129)||(387050-387131)
chr6 (348-377)||(6921352-6921381)
chr6 (348-377)||(6947882-6947911)
chr6 (177-241)||(387129-387193)
chr6 (105-165)||(6947558-6947618)
[»] chr4 (6 HSPs)
chr4 (325-379)||(53790590-53790644)
chr4 (121-173)||(53790820-53790872)
chr4 (329-375)||(53430082-53430128)
chr4 (338-375)||(53774881-53774918)
chr4 (98-162)||(11981426-11981490)
chr4 (266-306)||(53790681-53790721)
[»] chr2 (4 HSPs)
chr2 (338-375)||(18908801-18908838)
chr2 (338-375)||(18913549-18913586)
chr2 (338-375)||(18920757-18920794)
chr2 (127-167)||(21021047-21021087)
[»] chr3 (1 HSPs)
chr3 (328-375)||(3625775-3625822)
[»] scaffold0867 (1 HSPs)
scaffold0867 (105-167)||(4419-4481)
[»] chr8 (1 HSPs)
chr8 (127-172)||(27618720-27618765)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 91 - 379
Target Start/End: Original strand, 29597298 - 29597585
Alignment:
Q  91 ttcaaataaattcgaacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaataacaccacgttatt 190  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29597298 ttcaaataaattcgaacaagtaaatcattctaaagaa-cttactttcaacaaatcgaagccaaactttcaacataatccttggaataacaccacgttatt 29597396  T
Q  191 gcactaccaatagctttctttactctatttgttttcaaattataaagaattgcttttggtcctccatcgcatgcgaatatcaatgtttcaccattctcag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||| || |||||||||||||||||||||||||||||    
T  29597397 gcactaccaatagctttctttactctatttgttttcaaattataaagaattgctttgtgtcctacatagcttgcgaatatcaatgtttcaccattctcag 29597496  T
Q  291 aaagacagaatgggaagagagaatattccgaaaaattatctacttgtagattttgaaaactaattttaaggaattgagtccaagattgt 379  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29597497 aaagacagaatgggaagagataatattccgaaaaattatctacctgtagattttgaaaactaattttaaggaattgagtccaagattgt 29597585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 42 - 379
Target Start/End: Complemental strand, 29642737 - 29642396
Alignment:
Q  42 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatcattctaaagaaacttactttcaaca 141  Q
    ||||| |||||||||||| | | ||||||||||||||||||  || ||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  29642737 aatctattactatgaaattataaggatttcaaaataacata--catgaattcaaataaatttgaacaagtaaatcattgtaaagaaacttactttcaaca 29642640  T
Q  142 aatcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttctttactctatttgttttcaaattataaagaatt 241  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29642639 aatccaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttctttactctatttgttttcaaattataaagaatt 29642540  T
Q  242 gcttttggtcctccatcgcatgcgaatatcaatgtttcaccattctcagaaagacagaatgggaagagagaatattccga------aaaattatctactt 335  Q
    |||||  ||  | ||  || |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| |||      |||||||||||||     
T  29642539 gctttgtgttgtacacagcttgcgaatatcaatgtttccccattctcagaaagacagaatgggaaaagataatatttcgagtgaccaaaattatctacta 29642440  T
Q  336 gtagattttgaaaactaattttaaggaattgagtccaagattgt 379  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  29642439 gtagattctgaaaactaattttaaggaattgagtccaagattgt 29642396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 110 - 379
Target Start/End: Complemental strand, 29647992 - 29647713
Alignment:
Q  110 gtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttct 209  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| | ||||||  |||||||||||||||||||  ||    
T  29647992 gtaaatcattgtaaagaaacttactttcaacaaatccaagccaaattttcaacacaatccttggaaaagcaccacaatattgcactaccaatagctccct 29647893  T
Q  210 ttactctatttgttttcaaattataaagaattgcttttggtcctccatcgcatgcgaatatcaatgtttcaccattctcagaaagacagaatgggaagag 309  Q
    |||||||||||||||||||||||||||||||||||||  || || ||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29647892 ttactctatttgttttcaaattataaagaattgctttgtgtgctacatagcttgcgaatatcaatgtttcaccattctcagaaagacagaatgggaagag 29647793  T
Q  310 agaatattccga----------aaaattatctacttgtagattttgaaaactaattttaaggaattgagtccaagattgt 379  Q
    | |||||||| |          ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29647792 ataatattccaagtacgtaaccaaacttatctactagtagattttgaaaactaattttaaggaattgagtccaagattgt 29647713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 42 - 280
Target Start/End: Original strand, 29593898 - 29594135
Alignment:
Q  42 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatc-attctaaagaaacttactttcaac 140  Q
    |||||| ||||| ||||||||||||||| |||||||||||   || |||||  |||||||| ||||| ||||||| ||| |||||||||||||||||||     
T  29593898 aatcttatactacgaaatgacatggattccaaaataacatg--catgaatttgaataaatttgaacaggtaaatccattgtaaagaaacttactttcaag 29593995  T
Q  141 aaatcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttctttactctatttgttttcaaattataaagaat 240  Q
    ||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  29593996 aaatcgaagccaaactttcaaaataatccttggaaaaccaccacattattgcactaccaaaagcttgctttactctattcgttttcaaattataaagaat 29594095  T
Q  241 tgcttttggtcctccatcgcatgcgaatatcaatgtttca 280  Q
    ||||||  || || ||| || |||||||||||||||||||    
T  29594096 tgctttgtgttctacatagcttgcgaatatcaatgtttca 29594135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 29820884 - 29821081
Alignment:
Q  42 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatcattctaaagaaacttactttcaaca 141  Q
    |||||||||||||||||||| || |||||||||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29820884 aatcttttactatgaaatgatatagatttcaaaataacata--catgaattcaaataaattcgaacaagtaaatcattgtaaagaaacttactttcaaca 29820981  T
Q  142 aatcgaagccaaactttcaacataatccttggaataacaccacgttattgcactaccaatagctttctttactctatttgttttcaaattataaagaatt 241  Q
    |||| |||| |||||||||||||||||||||||| |||||||| || |   | |||||||||||| ||||||||||||  ||||||||| ||| ||||||    
T  29820982 aatccaagctaaactttcaacataatccttggaaaaacaccacattgtccgattaccaatagcttgctttactctattatttttcaaatcatagagaatt 29821081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29597188 - 29597229
Alignment:
Q  1 aaaacaattgtattcaatctagatattactaaacacttggga 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  29597188 aaaacaattgtattcaatctagatattaccaaacacttggga 29597229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 29597271 - 29597303
Alignment:
Q  42 aatcttttactatgaaatgacatggatttcaaa 74  Q
    |||||||||||||||||||||||||||||||||    
T  29597271 aatcttttactatgaaatgacatggatttcaaa 29597303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 28763580 - 28763654
Alignment:
Q  42 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatcat 118  Q
    ||||||||| || | ||||||| ||||||||||| || ||   ||| ||||||||||||||| ||||||||||||||    
T  28763580 aatcttttattaagtaatgacaaggatttcaaaacaaaatg--caacaattcaaataaattcaaacaagtaaatcat 28763654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29648045 - 29648008
Alignment:
Q  1 aaaacaattgtattcaatctagatattactaaacactt 38  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  29648045 aaaacaattttattcaatctagatattaccaaacactt 29648008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 19325709 - 19325870
Alignment:
Q  88 gaattcaaataaattcgaacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaataacaccacgtt 187  Q
    ||||||||| ||||| |||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||| ||| |||    
T  19325709 gaattcaaacaaattggaacaagtaaatcatcataaagaaacttactttcaacaaattgaagccaaactttcaacataatccttggcgaaactccatgtt 19325808  T
Q  188 attgcactaccaatagctttctttactctatttgttttcaaattataaagaattgcttttgg 249  Q
    ||| || ||| | |||||  || |||||||||   |||||||| ||| || |||||||||||    
T  19325809 atttcattactactagctagctctactctattatctttcaaatgatatagtattgcttttgg 19325870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 12819670 - 12819771
Alignment:
Q  82 atacaagaattcaaataaattcgaacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaataacac 181  Q
    ||||| |||||||||||||||| |||||||||||||   |  ||||||| | ||||||||||| |||||||||||||||||||||||||||| || ||||    
T  12819670 atacatgaattcaaataaattcaaacaagtaaatcaacatgtagaaactcagtttcaacaaattgaagccaaactttcaacataatccttggcatcacac 12819769  T
Q  182 ca 183  Q
    ||    
T  12819770 ca 12819771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 19645433 - 19645504
Alignment:
Q  105 aacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttggaat 176  Q
    ||||||||||||||  |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  19645433 aacaagtaaatcataataaagaaacttactttcaacaagttgaaaccaaactttcaacataatccttggaat 19645504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 22064423 - 22064351
Alignment:
Q  98 aaattcgaacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataatcct 170  Q
    |||||| |||||||||||| |  ||||||||||||||||||||||  |||| |||| |||||| |||||||||    
T  22064423 aaattcaaacaagtaaatcgtcgtaaagaaacttactttcaacaatacgaaaccaacctttcatcataatcct 22064351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 22070432 - 22070360
Alignment:
Q  98 aaattcgaacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataatcct 170  Q
    |||||| |||||||||||  |||||||| ||||||||||||||||   |||  ||||||||||||||||||||    
T  22070432 aaattcaaacaagtaaatagttctaaaggaacttactttcaacaataagaaatcaaactttcaacataatcct 22070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 660826 - 660876
Alignment:
Q  325 attatctacttgtagattttgaaaactaattttaaggaattgagtccaaga 375  Q
    |||||||| ||| ||||| ||| ||||||||||||||||||||||||||||    
T  660826 attatctatttgaagattatgataactaattttaaggaattgagtccaaga 660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 19344567 - 19344608
Alignment:
Q  338 agattttgaaaactaattttaaggaattgagtccaagattgt 379  Q
    ||||| ||||||||||||||||| ||||||||||||||||||    
T  19344567 agattctgaaaactaattttaagaaattgagtccaagattgt 19344608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 22100813 - 22100751
Alignment:
Q  105 aacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataat 167  Q
    ||||||||||||||| ||||| ||||||||||||||||   |||  ||| |||||||||||||    
T  22100813 aacaagtaaatcattgtaaaggaacttactttcaacaataagaaatcaagctttcaacataat 22100751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 20057832 - 20057877
Alignment:
Q  127 aacttactttcaacaaatcgaagccaaactttcaacataatccttg 172  Q
    |||||||| ||||||| | |||||||| ||||||||||||||||||    
T  20057832 aacttactatcaacaagttgaagccaagctttcaacataatccttg 20057877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 22063969 - 22063900
Alignment:
Q  98 aaattcgaacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataat 167  Q
    |||||| ||||||||||||||| || || ||||||||||||||||   |||  ||| |||||||||||||    
T  22063969 aaattcaaacaagtaaatcattgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 22063900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 29874872 - 29874827
Alignment:
Q  124 agaaacttactttcaacaaatcgaagccaaactttcaacataatcc 169  Q
    |||||||||||||||||||||| || | || |||||||||||||||    
T  29874872 agaaacttactttcaacaaatcaaaactaagctttcaacataatcc 29874827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 6864583 - 6864627
Alignment:
Q  122 aaagaaacttactttcaacaaatcgaagccaaactttcaacataa 166  Q
    |||| ||||||||||||||||| |||| |||| ||||||||||||    
T  6864583 aaaggaacttactttcaacaaaacgaaaccaagctttcaacataa 6864627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 24254115 - 24254237
Alignment:
Q  48 ttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatcattctaaagaaacttactttcaacaaatcga 147  Q
    |||||||| |||||||  |||||||||| ||||    || |||| |||| ||||| |||||||||||||||  |||||||||||| ||||||||||| ||    
T  24254115 ttactatggaatgacaaagatttcaaaacaacacg--catgaatccaaacaaattagaacaagtaaatcatcataaagaaacttattttcaacaaattga 24254212  T
Q  148 agccaaactttcaacataatccttg 172  Q
    ||||||||||||||| |||||||||    
T  24254213 agccaaactttcaacgtaatccttg 24254237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 387050 - 387131
Alignment:
Q  42 aatcttttactatgaaatgacatggatttcaaaataacatatacaagaattcaaataaattcgaacaagtaaatcattctaaagaaac 129  Q
    ||||||||||||||||||||||||||||||||||| ||||      ||||||||  ||||||||||||||||||| || |||||||||    
T  387050 aatcttttactatgaaatgacatggatttcaaaatgacat------gaattcaagcaaattcgaacaagtaaatcgttgtaaagaaac 387131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 377
Target Start/End: Original strand, 6921352 - 6921381
Alignment:
Q  348 aactaattttaaggaattgagtccaagatt 377  Q
    ||||||||||||||||||||||||||||||    
T  6921352 aactaattttaaggaattgagtccaagatt 6921381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 377
Target Start/End: Original strand, 6947882 - 6947911
Alignment:
Q  348 aactaattttaaggaattgagtccaagatt 377  Q
    ||||||||||||||||||||||||||||||    
T  6947882 aactaattttaaggaattgagtccaagatt 6947911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 387129 - 387193
Alignment:
Q  177 aacaccacgttattgcactaccaatagctttctttactctatttgttttcaaattataaagaatt 241  Q
    ||||| || |||||||| ||||||||| || ||||| ||||||  ||||||||||||| ||||||    
T  387129 aacacaacattattgcattaccaatagattgctttagtctattatttttcaaattatagagaatt 387193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 6947558 - 6947618
Alignment:
Q  105 aacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacata 165  Q
    |||||||||||||| | | |||||||||| ||||| | ||||| ||||| |||||||||||    
T  6947558 aacaagtaaatcatccaagagaaacttaccttcaaaatatcgatgccaagctttcaacata 6947618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 53790644 - 53790590
Alignment:
Q  325 attatctacttgtagattttgaaaactaattttaaggaattgagtccaagattgt 379  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  53790644 attatctacttgaagattctgaaaactaattttaagaaattgagtccaagattgt 53790590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 53790872 - 53790820
Alignment:
Q  121 taaagaaacttactttcaacaaatcgaagccaaactttcaacataatccttgg 173  Q
    ||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  53790872 taaaggaacttcctttcaacgaattgaagccaaactttcaacataatccttgg 53790820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 53430082 - 53430128
Alignment:
Q  329 tctacttgtagattttgaaaactaattttaaggaattgagtccaaga 375  Q
    |||||||| |||| |||  ||||||||||||||||||||||||||||    
T  53430082 tctacttgaagatgttggtaactaattttaaggaattgagtccaaga 53430128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 53774918 - 53774881
Alignment:
Q  338 agattttgaaaactaattttaaggaattgagtccaaga 375  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  53774918 agattctgataactaattttaaggaattgagtccaaga 53774881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 11981426 - 11981490
Alignment:
Q  98 aaattcgaacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaac 162  Q
    |||||| |||||||||||  || || |||||||||||||||||||  |||| |||| ||||||||    
T  11981426 aaattcaaacaagtaaattgttgtagagaaacttactttcaacaatacgaaaccaagctttcaac 11981490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 53790721 - 53790681
Alignment:
Q  266 aatatcaatgtttcaccattctcagaaagacagaatgggaa 306  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  53790721 aatatcagtgtctcaccattctcagaaagacacaatgggaa 53790681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 18908801 - 18908838
Alignment:
Q  338 agattttgaaaactaattttaaggaattgagtccaaga 375  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18908801 agattttgaaaactaattttgaggaattgagtccaaga 18908838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 18913549 - 18913586
Alignment:
Q  338 agattttgaaaactaattttaaggaattgagtccaaga 375  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18913549 agattttgaaaactaattttgaggaattgagtccaaga 18913586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 18920757 - 18920794
Alignment:
Q  338 agattttgaaaactaattttaaggaattgagtccaaga 375  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18920757 agattttgaaaactaattttgaggaattgagtccaaga 18920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 21021047 - 21021087
Alignment:
Q  127 aacttactttcaacaaatcgaagccaaactttcaacataat 167  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  21021047 aacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 3625822 - 3625775
Alignment:
Q  328 atctacttgtagattttgaaaactaattttaaggaattgagtccaaga 375  Q
    ||||| ||| ||||||||| ||||||||||||| ||||||||||||||    
T  3625822 atctaattgaagattttgataactaattttaagaaattgagtccaaga 3625775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 4419 - 4481
Alignment:
Q  105 aacaagtaaatcattctaaagaaacttactttcaacaaatcgaagccaaactttcaacataat 167  Q
    ||||||||||||||| ||||| ||||||||||||||||   |||  ||| |||||||||||||    
T  4419 aacaagtaaatcattgtaaaggaacttactttcaacaataagaaatcaagctttcaacataat 4481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 27618765 - 27618720
Alignment:
Q  127 aacttactttcaacaaatcgaagccaaactttcaacataatccttg 172  Q
    ||||||||||||| |||| ||| |||| ||||||||||||||||||    
T  27618765 aacttactttcaagaaattgaaaccaagctttcaacataatccttg 27618720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University