View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_high_14 (Length: 394)
Name: NF20070_high_14
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 38 - 372
Target Start/End: Complemental strand, 49700599 - 49700265
Alignment:
| Q |
38 |
gctctctagtgagacttattgattaccaaataccgaaagatgctcactgatcacagacctaagttttatcacatacgatctcagtttttgtcaaatcaaa |
137 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49700599 |
gctctctagtgaaacttattgattaccaaataccgaaagatgctcactgatcacagaccaaagttttatcacatacgatctcagtttttgtcaaatcaaa |
49700500 |
T |
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| Q |
138 |
tcaaaggataaccaaaaagaaaatattaccaattgaaaaattaggtcttttgacactcccttaaacaagtatacgttgtccatcattgaaaagaataagt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49700499 |
tcaaaggataaccaaaaagaaaatattaccaattgaaaaattaggtcttttgacactcccttaaacaagtatacgttgtccatcattgaaaagaataagt |
49700400 |
T |
|
| Q |
238 |
agtatgagatactagatcgaatagcttttggaagggaatcaataatctcttgttgctgcactccttccaaatcggttcggtacttcatgaacaaatgaga |
337 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49700399 |
agtatgagatactagattgaatagcttttggaagggaatcaataatctcttgttgctgcactccttccaaatcggttcggtacttcatgaacaaatgaga |
49700300 |
T |
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| Q |
338 |
aagcatctgttcttccaagtggataggtatcttat |
372 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
49700299 |
aagcatctgttcttccaagtggataggtatcttat |
49700265 |
T |
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