View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20070_high_15 (Length: 382)
Name: NF20070_high_15
Description: NF20070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20070_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 8383215 - 8383580
Alignment:
| Q |
1 |
cataggcacttccacataaccgaagatgtcaatttgcagtatcttcagtgatggtaaacttattgtcgtagagctttgtatgtttagatgaattgcattg |
100 |
Q |
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| T |
8383215 |
cataggcacttccacataaccgaagatgtcaattagcagtatcttcagtgatggtaaacttattgtcgtaaagctttgtatgtttagatgaattgcattg |
8383314 |
T |
|
| Q |
101 |
caaagactgtggaacaaacgaattattttatatcacattcataactatttagcactgatacataagatttaatgtatatacactatggtgccaaacaaca |
200 |
Q |
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| T |
8383315 |
caaagactgtggaacaaacgaattattttatatcacattcataactatttagcactgatacataagatttaatgtatatacactatggtaccaaacaaca |
8383414 |
T |
|
| Q |
201 |
acacgacatgaacatattggttataacaaaaatgtttcatagatttgaaaatcccaaaaaagtgatttaatttagtgtgtcaattgatggcatattggac |
300 |
Q |
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| T |
8383415 |
acacgacatgaacatattggttataccaaaaatgtttcatagatttgaaaatcccaaaaaagtgatttaatttagtatgtcaattgatggcatattggac |
8383514 |
T |
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| Q |
301 |
accgagacattggtgttcgacaatacgtgacttattgattacattcaattacttatatcttcttct |
366 |
Q |
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| T |
8383515 |
accgagacattggtgttcgacaatacgtgacttattgattacattcaattacttatatcttcttct |
8383580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 8367228 - 8367348
Alignment:
| Q |
13 |
cacataaccgaagatgtcaatttgcagtatcttcagtgatggtaaacttattgtcgtagagctttgtatgtttagatgaattgcattgcaaagactgtgg |
112 |
Q |
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| T |
8367228 |
cacataaccgaagatgtcaattagcagtatcttcagtgatggtaaacttattgtcgtagagctttgaatgtttagatgaatttcactacgaatactgtgt |
8367327 |
T |
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| Q |
113 |
aacaaacgaattattttatat |
133 |
Q |
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| T |
8367328 |
aacaaacaaattatattatat |
8367348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 4441497 - 4441280
Alignment:
| Q |
7 |
cacttccacataaccgaagatgtcaatttgcagtatcttcagtgatggtaaacttattgtcgtagagctttgtatgtttagatgaattgcattgcaaaga |
106 |
Q |
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||||||||| | ||||| || |||||| |||| |||||||| |||||||||||||||| |||| |||||| | || |||||||||| || |||| | |
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| T |
4441497 |
cacttccacgttaccgaggacatcaattagcagcatcttcagcgatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaata |
4441398 |
T |
|
| Q |
107 |
ctgtggaacaaacgaattattttatatcaca-ttcataactatttagcactgatacataagatttaatgtatatacactatggtgccaaacaacaacacg |
205 |
Q |
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||| ||||||||| ||| || |||||||||| ||||||||||||||| |||||||| ||||||| || ||||||||| ||||| | ||||||||||| |
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| T |
4441397 |
ctgaggaacaaacaaataatgttatatcacatttcataactatttaggactgatacttaagattgaagtcatatacactttggtgtcggacaacaacacg |
4441298 |
T |
|
| Q |
206 |
acatgaacatattggtta |
223 |
Q |
| |
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||| ||||||||||||| |
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| T |
4441297 |
acactaacatattggtta |
4441280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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